Ziziphus jujuba (Chinese jujube): 107417972
Help
Entry
107417972 CDS
T04794
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107417972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107417972
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107417972
mRNA degradation factors
5'-3' decay
Decapping complex
107417972
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
PEPcase
Motif
Other DBs
NCBI-GeneID:
107417972
NCBI-ProteinID:
XP_048330309
UniProt:
A0A6P4A2J8
LinkDB
All DBs
Position
2:join(8165041..8165122,8165521..8165666,8166259..8166315,8166552..8166615,8166697..8168864)
Genome browser
AA seq
838 aa
AA seq
DB search
MEGFGSGSGIHEAPNPQDLKQFGDNSTEGTVFDASQYAFFGKNVLEEVELGGLEDGQEDF
PAAGFDEEEFIFDREQREVLRSLSDIDDLASTFSKLNKGVTGPRNTGVIGDRRSRESSTA
SEWAQEEFPNWVDHQFYDAGSSLEGKRWSSQPISSAQLMELKPLYRTSSYPEEEQQVKPL
YRTSSYPEQEHQRQNHLQHFASEPILVPKSSFTSYPPPGGRSQHASPNHHSGHLNIPYLV
GHQGGLSSPNLNAFSNSQLQLSGPPHSPHFGGNLPQLNSGVRVNGRPPNQWVNQAGMYPG
DHSTLLNNLLQQQLSHQNGIMPPQLVTQSQQQQHRMHHHIQPSFNHLPGMQSHVFNPHLS
SPLMSKFEAMLGLADLREQRPKLSQKSRRNSRSSQQSSDSSSQKSDGGLPQFRSKYMTAD
EIESILRMQLAATHSNDPYVDDYYHQACLAKKSSGGKLRHQFCPTHLRDLPPRGRSNSEP
HAFLQVDALGRILFSSIRRPRPLLEVDPPNSSGPGSTEQKASEKPLEQEPMLAARVTIED
GLCLLLDVDDIDRFLQCSQLQDGGTQLRRRRQVLLEGLAASLQLADPLGKNGHSVGLVPK
DDLVFLRLVALPKGRKLLSRYLQLLFPGSELMRIVCMAIFRHLRFLFGALPSDPGAAETT
NDLARVVSLCVHGMDLGALSACLAAVVCSSEQPPLRPLGSSAGDGASLILKSVLERATEL
LMDPHAASNYNMTNRALWQASFNEFFGLLTKYCVNKYNSIMQSLLMQGPPNITVVGTDAT
KSIIREMPVELLRASLPHTDEHQRQLLMDFTRRSMSVGGSDSHNGDNGGIMNSESVLS
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggaggggtttgggagtggtagtggtattcacgaggctcccaatcctcaagatctcaag
caattcggagataattcaacagaaggtactgtatttgatgcatctcaatatgcattcttc
ggtaaaaacgtattagaagaagttgagcttggagggttagaagatggacaggaggatttt
cctgcagctggatttgatgaagaagaatttatttttgatagagaacagcgagaagttcta
agatctctgtctgatatcgatgatctagccagcaccttttcaaagttgaacaaaggcgta
actggaccaagaaacacaggcgtaattggggataggagatccagagaaagttcaactgcc
tcagaatgggcacaagaggagttccctaactgggttgaccatcagttttatgatgctggt
agcagtctagaaggaaagcgatggtcttcgcagccaatatcttctgctcagcttatggaa
ttaaagcctttgtacagaacgtcttcataccctgaagaggaacagcaagtcaagcctttg
tacagaacatcttcataccctgaacaggaacatcagcggcaaaaccacctccagcacttt
gccagtgaaccaattttggtgccaaaatcttctttcacttcatacccgccacctggtggc
agatcccagcatgcttcaccaaatcatcattctggtcatctgaatattccatatcttgtt
ggacaccaaggtggattatcttcaccaaacctcaatgccttctctaattctcagcttcaa
ttgtctgggccacctcattcaccccactttggtggaaatttaccacagcttaattctggt
gtccgtgtcaatggtcgacctccaaatcaatgggtcaaccaggctggcatgtatcctgga
gatcattctaccttattgaataatttattgcagcaacaattgtctcatcaaaacggtata
atgcctccgcaattagtgactcagtctcagcaacagcaacatagaatgcaccaccacatc
cagccatcctttaatcatttgccagggatgcagtcccatgtattcaatccccatctttct
tcacctttaatgagtaagtttgaagcaatgcttggtctggctgatctaagagaacaacgg
ccaaaattgagccagaaaagtagaaggaattctcgttctagtcagcagagttctgattca
agtagtcagaagagtgatggtgggttgccacagtttaggtctaagtatatgacagctgat
gaaattgagagtattcttcggatgcaacttgctgcaacacacagtaatgacccatatgta
gatgattattaccaccaggcttgtcttgcaaaaaaatcatctggggggaagctgaggcat
cagttttgcccaactcacctgagggatcttcctccccgtggacgctctaattctgaaccc
catgcttttctccaggtagatgctcttggaaggattctcttctcttcaattcgtaggccc
cgtcctcttcttgaagttgacccaccaaattcatctggtcctggaagcactgaacagaag
gcttctgagaagcccttagagcaggagccaatgcttgctgctagagtaacaattgaagat
ggactttgtcttcttcttgacgtagatgatattgatcgttttctgcaatgtagtcaacta
caagatggtgggacccagttgagacgtagacggcaggtcctgctggaaggacttgcggcg
tcacttcaactggctgacccactaggcaaaaatggccattcagttgggcttgttcccaag
gatgatcttgtgttcttgaggttagttgctctacctaagggacggaagctcctctcacgg
tacctacagcttctttttcctggcagtgagcttatgcggattgtttgcatggctatcttc
cgtcacttaaggttcttgtttggtgctctcccctctgacccaggagcagcagaaacgaca
aatgacctcgcaagggttgtttcattgtgtgttcatggcatggatcttggtgcacttagt
gcctgccttgcagcagtcgtttgttcatcagagcagccccctcttcgcccacttggcagt
tctgcaggagatggggcttctctcattctaaagtcagttcttgagagggcaactgaactt
ttgatggatcctcatgccgctagcaactataatatgactaatcgggcactttggcaggct
tccttcaatgaatttttcggtcttttaaccaagtattgtgtaaataaatataatagtatt
atgcagtcattgttgatgcagggtccaccaaatatcacagttgttggaacagatgcaacc
aaatctattattcgtgaaatgccggtcgaacttctacgtgcaagtcttcctcacacggat
gagcaccagaggcagctattgatggattttacacggcgctccatgtctgtaggtggatct
gacagtcataatggcgataatggtggtatcatgaattcagaatcggtgctaagctga
DBGET
integrated database retrieval system
