Ziziphus jujuba (Chinese jujube): 107417979
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Entry
107417979 CDS
T04794
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X2
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03013
Nucleocytoplasmic transport
zju03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107417979
03015 mRNA surveillance pathway
107417979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107417979
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107417979
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_ACIN1
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
107417979
NCBI-ProteinID:
XP_015882129
UniProt:
A0A6P3ZRV3
LinkDB
All DBs
Position
2:complement(join(8133412..8133475,8134161..8134192,8134284..8134350,8134527..8134643,8134876..8134941,8135029..8135263,8135360..8135519,8135604..8135684,8135769..8135815,8136021..8136112,8136427..8136495,8137281..8137513))
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AA seq
420 aa
AA seq
DB search
MAKPSRGRRSPPSGSNSGSSSRSRSYSGSSSRSTSRSRSYSRSPSVSRSPSRSRSISTSS
SPSRSASSRSRTPPPRKSPVETARRGRSPPPQSKKASPPPRKASPSTHESLVLHIDALTR
NVHEGHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRSDAEKAQLYMDGAQIDGN
VVRARFTLPQRQKVSPPPKAVAGAPKRDISKSDNVSADKDGPKRPREPSPRRKPPPSPRR
RSPVARRGGSPRRLPDSPPRRRAESPVRRRIESPYRRGDTPPRRRLASPPRGRSPSPPPR
RRSPARASPRRMRGSPIRRRSPLPPRRRSPPRRARSPRRSPISRRRTRSPIRRPARSRTR
SISPPRRGRAPATRRGRSSSYSESPSPRKVTRRVSPSPRRPLRGRSSSNSSSSSSPPRKP
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccgagcagaggccgtcggtcgcccccatcaggctccaattcaggctcatct
tcacggtcgcgttcatactccggctcgtcgtctcgctccacttctcgctcgcgttcgtat
tctcggtccccttcggtttctcgctccccatctcgttccaggtctatctccaccagttcc
tctccttctcgcagcgctagttctcgcagccgaaccccacctcctaggaaaagtcctgtt
gaaacagctaggcgtggtcgatctccaccaccacaatctaaaaaagcttcaccgcctcca
aggaaagcttctccttctactcatgagtcgcttgttcttcatattgatgcacttaccagg
aatgtgcatgaaggccatctgaaagaaattttcagtaactttggtgaagttgttcatgtt
gagctggcaatggatcgaactgtcaatttgccgaaaggatatggatatgttgagttcaag
acgagatccgatgctgaaaaagcacaattgtacatggatggtgctcaaattgatggtaat
gtagttcgagcaaggttcacattacctcagagacaaaaggtttcacctcctcctaaagct
gttgccggtgctccgaagagagacatttccaaatctgataatgttagtgctgacaaggat
ggacctaagcggccaagagaaccttctccccggcgaaaacctcctccctcaccacgaagg
aggtcacctgtagctcgaagaggtggatcgcctagaagactgccagactctcctccacgt
cgtcgtgctgagtctcctgttcgtcgtagaatagagtctccttatcgtcgtggtgatacg
cctccccgcaggaggcttgcatcgccacctaggggccgttctccatcacctcctccaaga
cggcggtctcctgctagagcctctcctagaaggatgcgtggcagtcctattcgtagacgc
tctccccttcctccaaggcgccgttcacctccaagacgggctcgcagtcctcgaaggtct
ccaattagccgtagacgtactcgttctcctattcgtaggcctgctcgctcacgtacaaga
tcaatatcaccaccgcgaaggggtcgagcaccagcgacaagacgtgggaggtcatcatca
tactctgaatcacctagtccacggaaggtaacgcggcgggtatccccaagtccaagaagg
cctttgagaggacgaagtagtagcaatagcagcagcagcagttcaccacctcggaagccg
tag
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