KEGG   Ziziphus jujuba (Chinese jujube): 107418757
Entry
107418757         CDS       T04794                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107418757
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107418757
   03012 Translation factors [BR:zju03012]
    107418757
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107418757
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     107418757
Translation factors [BR:zju03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    107418757
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 AAA_19 nSTAND3 ATPase AAA_16 T2SSE AAA_30 PhoH
Other DBs
NCBI-GeneID: 107418757
NCBI-ProteinID: XP_015882948
UniProt: A0A6P3ZQ58
LinkDB
Position
2:join(15825868..15826302,15827399..15827553,15827645..15827732,15827965..15828201,15829056..15829151,15829372..15829560,15829890..15830049,15830130..15830260,15830547..15830720,15830802..15831074,15832265..15832459,15832998..15833201,15833399..15833468,15833583..15833731,15834403..15834711,15835110..15835169,15835267..15835419,15835508..15835618,15835781..15836272)
AA seq 1226 aa
MPCSAMFQGYIRTMSLTPTTTTATATTCMVFRSKTLHCNNLKHSLLSFVMRHNKNSFHTQ
RLCRFYCTNGHVGLGGFTCLSSSSSRTVEVDWRQRQRQRLRQRSVDNNMLFWNHQQSLNY
GRYAYQDVSSSDDSDMEIGSSRSQLGASTLDNINEWEWKLTMLLRNKEEQEVVSREKKDR
RDFDQLSALATRMGLYSRQYAKVVVFSKVPLPNYRSDLDDKRPQREVILPFGLQQDVDSH
LKKHLSQKPKNREDNSLSRSSSDLSTVTDEGLYEQKEPFVQNSVIMEKILRRKSLQLLNQ
QQDWQDSVEGQKMLEFRRSLPAYKERGSLLKAISENQVVVVSGETGCGKTTQLPQYILES
EIEAGRGAACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFC
TTGILLRRLLVDRNLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSATLN
AELFSSYFGGAPMMHIPGFTYPVRAYFLENILEKTGYQLTPYNQIDDYGQEKSWKMQKQA
QALKKRKSQIASSVEDALENVDLREYSVRTRESLSCWNPDSIGFNLIEHVLCHIVRKERP
GAILVFMTGWDDINSLKDQLQSHPLLGDPSRVLLLACHGSMPSSEQRLIFDKPEDGVRKI
VLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQ
PGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSV
QNAVEYLKIIGALDEHENLTILGRNLSVLPVEPKLGKMLILGAIFNCFDPIMTVVAGLSV
RDPFLMPFDKKDLAESAKAQFSARDYSDHLALVRAYEGWKDAERQQSGYEYCWRNFLSSQ
TLKAIDSLRKQFLFLIKDTGLLEHNTENYNMWSHDEHLIRAVICAGLYPGMCSVVNKEKS
ITLKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSALLLFGGK
ISRGGLDGHLKMLGGYLEFFMKPSLAETYITLKTELDELIQKKLLNPKLDVQSQIELLSA
VRLLVSEDQCDGRFVFGRQVPVPVKKATKQTLPGTLRVSDKGGDSNSKSLLQTLLARAGH
AAPTYKTKQLKNNMFRATVIFNGLDFVGKPFGNKKLAEKDAAAEALLWLKGESHASSTDI
DHMSMLLKKSKKKTQKSTSFHSSKWS
NT seq 3681 nt   +upstreamnt  +downstreamnt
atgccctgctcagccatgtttcagggctatatcagaaccatgtcgctcacacccaccacc
accaccgccacagccaccacttgcatggttttccgcagcaaaaccctccattgcaataat
ctgaagcattccttgttgagttttgtcatgaggcacaacaagaattccttccacactcaa
aggttatgtaggttctactgcacaaatggtcacgtgggtcttgggggtttcacgtgctta
tcgtcttcttcttcacggaccgttgaggttgattggcggcagagacagaggcagaggctg
agacagaggagtgttgataataatatgcttttttggaatcatcagcagagtttgaattat
gggaggtatgcttatcaggacgtttctagcagcgatgactcggatatggaaattgggtct
tctcggagccaactgggtgcttctacccttgataacattaatgaatgggaatggaagtta
acaatgctccttcgcaacaaagaagagcaagaggtagtgtctagggagaaaaaggacaga
cgagattttgaccaactttcagcactggcaacgagaatgggtttgtatagccgtcaatat
gctaaagtagttgtctttagtaaagtacccctaccaaactacaggtctgatctggatgat
aagcgtccacagagagaggtgatcttaccttttggattacaacaagatgtagattctcat
cttaaaaagcatctttctcaaaagccaaagaacagggaagataattccttgtcaagatca
agcagtgatctaagtaccgttactgatgaggggctttacgagcagaaggagccattcgta
cagaatagtgttataatggagaaaattctacggcgtaaaagtttgcaacttctcaatcag
cagcaagattggcaggactcagtggaaggtcaaaagatgcttgaatttcgtagaagtctt
cctgcatataaagagaggggttcattgttaaaagccatatcagaaaaccaggttgttgtt
gtgtcaggtgaaactggttgtggtaaaactacacagcttcctcagtacattttagaatct
gagattgaagctggtcgtggagctgcatgcagtattatttgtactcaacctcggcgaata
tccgccatggctgtttctgaaagagttgctgctgagcggggagaaaaactgggggaatct
gttggttacaaagttcggctggagggaatgaaagggagggacactcggcttctcttttgc
accactggcatattgttgaggaggctacttgttgacagaaacttgagaggtgttacacat
gtcattgttgatgagattcatgaacgtggaatgaatgaagattttcttctcattgtcctg
aaagaacttcttcctcgtcgaccagaattaaggttaattttgatgagtgcaaccctaaat
gctgagcttttctcttcttattttggtggtgctccaatgatgcatattcctggttttaca
taccctgttagagcatattttcttgagaatattctggaaaagactggataccagttgact
ccatataatcaaattgatgattatggtcaagaaaagtcatggaaaatgcaaaaacaagct
caagctctcaaaaagagaaagagtcagattgcttcttcagttgaggatgcacttgaaaat
gtagacctcagagagtatagtgtaaggactcgggagtctttgtcctgttggaatcctgac
tcaattggatttaacctcattgagcatgtgctttgccacatagtcagaaaggaaaggcct
ggtgctattttggtttttatgactggctgggatgacataaactctttgaaggatcagctc
caatcacatcctctcttaggcgatcctagcagggtcttgctgcttgcatgccatggttcc
atgcccagttctgagcagagattaatattcgataagccagaggatggagtgcggaaaata
gttcttgctacaaatatggctgaaactagcatcactatcaatgatgtggtttttgtggtt
gactgtggaaaggctaaagagacatcatatgacgcactaaataacacaccttgtttgctt
ccatcatggatctcaaaggctgctgctcggcaaagaagaggaagagctggtcgtgttcaa
cctggcgagtgttaccatctctatcccagatgtgtatatgatgcctttgctgattatcaa
ctgccggagcttctgagaacaccattacagtctttatgtttacaaatcaaaagcttacaa
cttggaagtatttcagaattcttgtctagggccttgcaaccaccagaacctctctcggtt
caaaatgctgtagaatatttgaagatcattggggctttagatgaacacgaaaatctaaca
atactagggcgcaacctgtcagtgcttccagttgaacctaaacttggaaaaatgctcata
ttaggggctattttcaactgttttgatccaatcatgactgttgttgcgggattgagtgtc
agagatccattccttatgccttttgacaagaaggatcttgcagagtcagcaaaagcacag
ttctcagcccgtgattacagtgatcaccttgcattagtccgagcttatgagggttggaaa
gatgctgaaagacagcaatctggttatgaatactgttggagaaattttctatcttcacaa
actctaaaagccatcgactctcttcgcaagcagttcctttttttgatcaaagatactggt
ctgcttgagcacaatacagaaaactacaatatgtggagtcatgatgagcatcttatccga
gcagtcatctgtgcgggtttgtatcctggaatgtgctctgttgtgaacaaagaaaagtcc
ataactttgaaaacaatggaagatggtcaagtacttctatattctaattctgtcaatgct
ggggtaccaaaaattccatatccatggctagttttcaatgaaaaggtgaaagtgaattca
gttttcctccgagattcaactggtgtatctgattctgcgctgctcttatttggagggaaa
atttccaggggtggactagatggacacctaaaaatgttaggaggatacttggagtttttc
atgaaaccttcactggcagagacatatattactttgaagacggagcttgatgaactgatc
cagaagaagcttttgaatcccaaattggatgtacaatctcagattgagctactgtctgca
gtaagattgctggtctcggaggaccagtgtgatggtagatttgtctttggtcgccaggtg
ccagtaccagttaaaaaagcaacaaaacagacgcttcctggcactttgagagtaagtgat
aaaggtggggacagcaattccaaaagcctgctgcaaacgttgcttgctagagctggacat
gcagcgcccacctacaagacaaaacaactgaaaaacaacatgttccgtgccacagtgatc
ttcaatggattagactttgtagggaagccttttggtaataagaaacttgcagaaaaggat
gcagctgctgaggctcttctttggttgaagggtgagagccatgcatcttccacagatatc
gaccatatgtcaatgcttttaaagaagagtaaaaagaaaactcagaaaagcacctcattt
cacagttccaagtggagttaa

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