KEGG   Ziziphus jujuba (Chinese jujube): 107418858
Entry
107418858         CDS       T04794                                 
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
  KO
K08735  DNA mismatch repair protein MSH2
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    107418858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:zju03400]
    107418858
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     107418858
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_I MutS_II DUF2465 Serine_rich
Other DBs
NCBI-GeneID: 107418858
NCBI-ProteinID: XP_048330048
LinkDB
Position
2:complement(join(17884284..17884484,17886006..17886158,17886654..17886856,17887926..17888052,17888618..17888728,17889023..17889094,17889190..17889279,17889439..17889549,17889635..17890189,17890550..17891623,17892403..17892435,17893409..17893458,17893587..17893635))
AA seq 942 aa
MGESFEELSKLPELKLDAKQAQGFLSFFKTLPDDPRAIRFFDRRDYYTAHGENATFIAKT
YYHTTTALRQLGSGSDGLSSVSVSRNMFETIVRDLLLERTDHAVELYEGSGSSWRLVKSG
TPGNISSFEDILFANNEMQDTPVIAALLPNFRENSCTIGLGYIDLTKRVLGLAEFIDDSH
FTNLESALVALGCKECLMPLESGKSGEMRNLHDSLARCGVMLTERKKTEFKTRDLVQDLG
RLVKGSIEPVRDLISGFDIASGALGALVSYAELLADESNYGNYTIQRYNLHSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVGEINTRLDLVQAF
VEDPALRQDLRQHLKRISDIERLTNNLERRRVGLQHIIKLYQSSIRLPYIESALGKYDGQ
FSLLIKQRYLDLLESLTDEDHLNKFIALVETSVDLDQLENGEYIISSSYDAALSALRKDQ
ESLERQIHNLHKQTANDLDLALDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQHQKILEEYKNCQKELVNRVVQTAATFSEVFRSLAALLSELD
VLLSFADLASSCPTPYTRPDITPSDEGDIILQGSRHPCVEAQDWVNFIPNDCELVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAFQNADPEPDMKHIVGVANYHVSAHIDSSSRKLTMLYKVEPGPCDQSFGIHVA
EFANFPESVVSLAREKASELEDFAPTAIISNDSVEQVGSKRKRECDPDDVSRGAARAHQF
LKEFSDLPLEKMDLKQVLEKISKMKSDLEKDAVNCRWLQQFI
NT seq 2829 nt   +upstreamnt  +downstreamnt
atgggtgagagttttgaggagctaagcaagcttcctgagctcaaactagatgccaaacaa
gctcagggatttctttcattcttcaaaaccctgcccgacgacccaagagctattcgattc
tttgatcgccgggactactatactgctcatggcgaaaatgcaactttcattgcaaagacc
tactaccatactaccactgcactgcgacagttaggcagtggttctgatggcctgtctagt
gtcagtgtcagtagaaacatgtttgaaacaattgtccgggatcttctcctggagagaaca
gaccatgctgttgagctttatgagggcagtggctctagttggagactggtgaaaagtgga
actcctggaaatataagtagttttgaagatattttatttgccaacaatgagatgcaggat
actcctgttattgctgcactattgcctaattttcgtgaaaatagttgtaccattgggtta
ggctatattgatttaactaaaagagttcttgggttagctgaatttattgatgatagccac
ttcacaaatttggaatcagcgttggttgctcttggttgtaaggaatgcctcatgcctctg
gaaagtggaaaatctggtgaaatgagaaatttgcatgattcattggctagatgtggtgtg
atgttaacagagaggaagaaaactgagttcaagacaagagatttggtgcaggatcttggt
aggcttgttaaaggttctattgaacctgttcgagatttaatttctgggtttgatattgca
tccggtgctttaggggcattagtatcatatgcagaactactggcagatgagagcaattat
ggaaattatacaatccaaagatacaatcttcacagctacatgaggttagattctgctgca
atgagggcactaaatgtcctggaaagcaaaacagatgcaaacaaaaatttcagtttgttt
ggtctcatgaatagaacctgtactgccggaatgggaaaacggttactacatatgtggctt
aagcagcctttattagacgtaggtgaaatcaatactaggctggatttggtacaagcattt
gtggaggatcctgcgcttcgccaagatttgaggcagcatcttaaaagaatctcagatatt
gagcgacttacaaacaatcttgagaggcgaagagttggtttgcagcatattataaagctt
tatcagtctagtataagacttccatacattgagagtgccctaggaaagtatgatggtcaa
ttttcgttgctaatcaagcagaggtatttggatctccttgaatcattgactgatgaggat
cacttgaacaagtttattgctctagttgaaacttctgtagaccttgatcaacttgagaat
ggggaatacataatatcttctagttatgacgctgcattgtcagcactgagaaaggatcaa
gagtcattagaacgccaaatacacaatttgcataagcaaactgctaatgatcttgatttg
gctctagataaggctttaaaactagataaaggcacacaatttggacatgtttttaggatt
acaaagaaagaagaaccaaaaataaggaagaagcttaccacccaattcattgtgctggaa
actcgaaaggatggagtgaaattcacaaacacaaagcttaaaaagctgggggaccagcat
caaaagattctcgaggagtacaagaattgtcagaaagaactggttaaccgagtagttcaa
actgcagcaactttctcagaggtgttcaggtctttagctgctttgctatctgaattagat
gttttactcagttttgctgatttggcttctagttgccctactccctacaccagaccagac
atcactccgtcggatgagggagatatcatattgcaagggagtagacatccatgtgttgaa
gctcaagactgggtgaactttatcccaaatgattgtgaactggtgaggggaaaaagttgg
tttcaaatcataacgggccctaatatgggtggaaaatcaacatttattaggcaggttggt
gtgaacattttaatggcacaagttggttcttttgttccatgtgataaagctagcatttct
gttcgtgattgcatttttgctcgtgtgggtgctggtgattgccagctacgtggagtttct
acctttatgcaagagatgctcgagaccgcatcaattttgaaaggagctacagataagtca
ttgataatcattgatgaattgggccgagggacatcaacttatgatggatttggtttagct
tgggcgatttgtgagcaccttgttgaagtgattaaagcaccaactttgtttgcaactcac
tttcatgaattgactgcattagcatttcaaaatgctgatcctgagcccgatatgaagcat
attgttggtgtcgcaaactaccatgttagtgcacatatcgactcatcaagtcgaaaattg
accatgctatataaggttgagccaggaccctgtgatcaaagttttggtattcatgttgca
gaatttgcaaactttcctgaaagtgttgtttcccttgctcgagaaaaggcttctgaatta
gaggatttcgcacctactgcaattatttcaaatgattctgtagaacaggtaggatcaaag
cgcaagagagaatgtgatccggatgatgtctcccggggtgctgcccgggcacaccagttt
ctgaaagagttttctgatctgccattagagaagatggatttaaagcaggttttagaaaaa
ataagcaaaatgaaaagtgacttggagaaggatgcagtaaactgccgatggctccagcaa
ttcatctag

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