KEGG   Ziziphus jujuba (Chinese jujube): 107419467
Entry
107419467         CDS       T04794                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4-like
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03020  RNA polymerase
zju03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107419467
  09124 Replication and repair
   03420 Nucleotide excision repair
    107419467
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107419467
   03400 DNA repair and recombination proteins [BR:zju03400]
    107419467
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     107419467
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107419467
SSDB
Motif
Pfam: RNA_pol_Rpb4 ZW10_C2 Orthopox_35kD
Other DBs
NCBI-GeneID: 107419467
NCBI-ProteinID: XP_048329990
UniProt: A0ABM3IJW0
LinkDB
Position
2:join(30486543..30486594,30488014..30488122,30488286..30488363,30488787..30488820,30488922..30488990,30489137..30489214)
AA seq 139 aa
MNVKEEEEDASVLKLGDEFLKAKCLMNCEVSILLEHRCDQLKHLSDDSLKQLPQVFEKAL
QYVKRFSRFTNQDAVKQVREVLSRYQLAEYELAVLGNLCPETVEEANAVVPSLKTKGRSH
DDEAIEKLLNDLLMVKKFE
NT seq 420 nt   +upstreamnt  +downstreamnt
atgaatgttaaagaagaggaagaagacgcttcagtgctcaaacttggcgacgaattttta
aaggccaaatgtctaatgaattgtgaggtttccattcttcttgagcatagatgcgatcaa
ctcaagcatttgtctgatgactcattgaaacaacttccacaagtgtttgagaaagcgctg
caatatgttaaacgtttcagccgcttcactaatcaggatgctgtaaagcaagttagagaa
gtccttagcagataccaattggctgaatatgagcttgctgtgcttggaaatctttgcccg
gaaactgtagaggaagctaatgccgttgtgccttctctaaagacgaaaggacgaagccac
gacgacgaagcaatagagaaactgttgaatgacctactaatggtaaagaaatttgagtga

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