Ziziphus jujuba (Chinese jujube): 107420007
Help
Entry
107420007 CDS
T04794
Name
(RefSeq) THO complex subunit 5B
KO
K13174
THO complex subunit 5
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03013
Nucleocytoplasmic transport
zju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107420007
09122 Translation
03013 Nucleocytoplasmic transport
107420007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107420007
03041 Spliceosome [BR:
zju03041
]
107420007
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
107420007
Spliceosome [BR:
zju03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107420007
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
107420007
NCBI-ProteinID:
XP_015884352
UniProt:
A0A6P3ZSZ4
LinkDB
All DBs
Position
5:complement(join(2853261..2853527,2853934..2854065,2854159..2854753,2855067..2855326,2855475..2855812,2856192..2856528,2856657..2856947,2857155..2857382))
Genome browser
AA seq
815 aa
AA seq
DB search
MLEDEEIEEGMLVEDDAQTEVERPVEKSPYEMLQESKASVEDIVAKMLSIKKEAKPKSQL
RELVTQMFVHFVTLRQANRSILLEEDRVKAETERAKAPVDFTTLQLHNLMYEKSHYLKAI
KACKDFKSKYPDIELVPEEEFFRDAPEEIKTSVLSNDNAHNLMLKRLDFELFQRKELCKL
REKLEGQKKSLLETIANRKKFLSSLPSHLKSLKKASLPVQNQLGVLHTKKLKQHHSAELL
PPPLYVVYSQLLAQKEAFGEQIDLEILGSLKDAQTFAHQQANVETGISTVVENSRMDDDA
ADEEDDGQRRRKRPKRVPTKEGLDQTRVYQVHPLRIILHVYDDEVSDSKPAKLITLKFEY
LLKLNVVCVGIEGSHEGPKNNILCNLFPDDTGLELPHQSAKLFVGDAFAFDERRTSRPYK
WAQHLAGIDFLPELSPLLSGRETPSSDVAKSDAVISGLSLYRQQNRIQTVVQRIRSRRKA
QLALVEQLDSLMKLKWPALSCESVPWALHRPLCNLLGWSPVGSPPNQASSLSVMDKEQVQ
EPTDADLVGRSIASKEDLESREDGELPSLAPVTSVISDIKLTPLKESNLDHSRQLALISK
SITPPISKAKSQSFKKNDEDSDLMLDIDGGLDEPAYIEQEEENPVPIQDVTGKLWVDYGL
RVYSLVLTRNIGTDKRTMKLEAKIKISMEYPLRPPLFALSLCTITGENHYSDDGSEWFNE
LRAIEAEVNLHMLKMLPSDHENYILAHQVCCLAMLFDYYMDELSSSSEKRKSTSVVDIGL
CKPVSGQLVARSYRGRDRRKMISWKDTECTPGYPC
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgctggaagacgaggaaatagaggaggggatgctggtcgaagacgatgcgcagacagag
gttgagcggccggtggagaaatcgccatatgaaatgcttcaagagagcaaggcttccgtg
gaggacatcgtcgccaagatgctctccattaaaaaagaagccaaacccaaatcccagctc
agagaactcgtcactcagatgttcgtccacttcgtcacccttcgccaggcaaatcgttcc
atcttgcttgaagaagatcgtgtgaaagcagagacggaacgtgctaaggcaccggtggac
ttcacaactctgcaacttcacaatctaatgtatgaaaaaagccactatctcaaagccata
aaagcctgcaaagacttcaagtcaaaatacccagatatcgaacttgtgcctgaagaggaa
tttttccgagatgcacctgaggagataaaaacttctgtattatcaaatgataatgcacac
aacctgatgctgaagaggctcgattttgaactgtttcagcgcaaagagctctgcaaactt
cgtgagaaacttgaaggacagaagaaaagtcttctggagaccattgccaacaggaaaaaa
ttcttgtcaagtctcccctcacacctcaaatcccttaaaaaagcatctttgcctgtgcag
aaccagttaggggttctgcatacaaagaaactaaaacagcaccactcagcggaattgctt
ccgccccctctctatgtggtatactcacagttgttggcacagaaggaagcatttggagaa
caaattgatctggagatactaggaagtctgaaggatgcccaaacttttgctcaccagcag
gcaaatgtggaaactggcatttctactgtggtagagaattccagaatggatgatgatgct
gctgatgaggaagatgatgggcagagaaggagaaaacggcccaagagggttccaaccaaa
gaaggccttgaccagactcgagtatatcaagttcatcctctgagaataatccttcatgta
tatgatgatgaggtttctgattccaagcctgcaaaacttataactctgaagtttgagtat
ttgttgaagttgaatgttgtatgcgttggaattgaaggatcccatgaaggtcccaagaat
aacatcttatgcaacttatttccagatgacactggccttgagcttcctcaccagtcagcc
aagctctttgttggtgatgcatttgcatttgatgaaaggagaacttcccgtccttataag
tgggcgcagcatttggcgggaattgatttcttgcctgagttgtctcctctgttaagtggg
cgtgaaactccaagcagtgatgtagctaaaagtgatgctgttatatctggcctttctcta
taccgccagcagaatcggatacagacagttgtgcaaagaatccgatctcggagaaaggct
cagctggctcttgtggaacagcttgattcacttatgaagcttaaatggccagctttgtct
tgtgaaagtgttccatgggctttgcatagaccgttgtgcaatttgcttggttggtcacct
gtaggatcccctcctaatcaggcttcatctttgtctgttatggacaaagaacaggttcaa
gaacctacagatgctgatttggttggaagatctatagcttcaaaagaggatctagaaagt
agggaagatggggagcttccatctttagctccagtcacatctgttataagtgatattaaa
ctcactccattaaaagaatctaatcttgaccactccaggcagctggctttaatttcaaag
agtatcacacctccaatcagtaaggcaaaatcacaaagttttaagaaaaatgatgaagat
tcagatcttatgctggatattgatggtggtctggatgagcctgcatacattgaacaagag
gaagaaaatccagtgcccattcaagatgtcactggaaaactgtgggtggattatggattg
agggtgtattctcttgttttaaccaggaatataggaactgataaaaggaccatgaagtta
gaagccaagattaaaatcagcatggagtatcctttgaggcctcctctttttgcgttgagt
ctttgcactataacgggtgaaaaccattatagtgatgatggttctgagtggttcaatgaa
ctacgtgcgatagaagcagaggttaatctgcatatgttgaagatgttgccttcagatcat
gaaaattatatcttagctcatcaagtttgctgtttggcaatgttgttcgactattatatg
gatgagctatcttcgtcttctgaaaagagaaagagtacttcagtggttgacattggtttg
tgtaagcccgtcagtggtcagcttgttgctagatcatatagaggaagggatcgcaggaag
atgatatcctggaaggacacggaatgcactcctggatatccctgctag
DBGET
integrated database retrieval system
