KEGG   Ziziphus jujuba (Chinese jujube): 107420614
Entry
107420614         CDS       T04794                                 
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X4
  KO
K12821  pre-mRNA-processing factor 40
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107420614
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zju03041]
    107420614
Spliceosome [BR:zju03041]
 Complex A
  U1 snRNP components
   U1 related factors
    107420614
 Complex B
    107420614
SSDB
Motif
Pfam: FF WW WW_TCERG1 FF_RHG35_4th
Other DBs
NCBI-GeneID: 107420614
NCBI-ProteinID: XP_015885096
UniProt: A0A6P4AAE4
LinkDB
Position
5:complement(join(3936485..3936622,3936758..3937090,3937804..3937906,3938062..3938126,3938232..3938339,3938492..3938584,3938666..3938713,3938989..3939087,3939227..3939343,3939425..3939478,3939593..3939685,3939777..3939857,3939990..3940095,3940210..3940244,3940338..3940424,3940536..3940613,3940696..3940764,3940871..3940969,3941223..3941283,3941394..3941746,3941837..3941894,3942058..3942110,3943658..3943727,3943852..3943925,3944245..3944439,3944541..3944837,3944929..3944994,3945386..3945421))
AA seq 1022 aa
MDGTSSQSSSAQPLRPPAVASMGPQSFGPSLSMQFRPVVPSQQGQPFSQQFQPNIGMPSG
PGQPLQFSQPMQQYPPRPSQPGPMPSSQGLPISYIQTRPITSGPPQSQQPAPPFSNQMPG
LAGAGAPFSSSYSFPPSSFAQPQNNVSSMPQFQPQSQMQAPVVPVGGQPWLSSGSQGAAV
VTPVQQPQQPSPAPSADNTTNVPSGTQQSSSDWQEHTSADGRRYYYNKRTKQSSWEKPLE
LMTPIERADASTVWKEYSSPDGRKYYYNKVTRQSKWTMPEELKLAREQAQKEASQGNQSD
TGLTSHTPVAVASAGTSIVATNSVGTSTPTAPTGVALSPVAVTPVASSANPPLIGSGSSA
APGAQSSVPGAVGVQPPMVTATPLPPTVSGTTGTPANTTSMSRASQDITNSKDGASKQDI
EEARKGMAVAGKINVTPIEEKSPDEEPLVYVNKLEAKNAFKSLLESANVQSDWTWEQAMR
EIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTKMLEESKELTSS
TRWSKAVTMFENDERYKAVERARDREDLFESYIVELERKEKEKAAEEHRRNIAEYRKFLE
TCDFIKVNSQWRKVQDRLEDDERCLRLEKLDRLLIYQDYIRDLEKEEEEQKKIQKEHLRR
VERRNRDEFRKLLEDHVAAGTLTAKTHWRDYCLKIKELPQYQAVASNTSGSTPKDLFEDV
AEELEKQYHEDKTRLKDAMKIGKITFASTWTFEDFKNAVSEETGSPPVSDINIKLVYEEL
LERAKEKEEKEAKKRQRLADDFNKLLYTFKEITVSSNWEDCKQLFEDSQEYRSIGEESLR
REIFEDHIAHLQEKAKEKERKREEEKARKDKEREEKDKRKEKEKEKKEKEKEKEKEKEKE
REKEKGKERSKKDETDSENVDMTDSHSHKEDKKKEKDKERKHRKRHQSATDDMGSDKDEK
EESKKRRHGSDRKKSRKHAYSPESDNESRHRRHKREHRDGSRRNGGYEELEDGELGEDGE
IQ
NT seq 3069 nt   +upstreamnt  +downstreamnt
atggacggtactagttctcagtcatcatctgcacagccacttcggcctcctgcagttgct
tccatgggacctcagagttttggtccatccttgtctatgcaatttcgaccagttgttcca
agtcagcaaggacaaccattttcccaacagtttcaaccaaatatagggatgccttctggt
cctggtcaaccgctacaattttctcaacctatgcagcagtatcctccgaggcctagtcag
cctggtcctatgccttcgtcacagggtttaccaatttcatatattcagacaaggcctatt
acatctggcccaccacagtcacagcaacctgctcccccttttagcaatcagatgcctggc
ttagctggtgctggagcacctttttcttcatcatattcttttccaccatcatcttttgcc
cagccacagaataatgtcagttcaatgccccagttccagccacagtctcaaatgcaagca
cctgtagtacctgttggcgggcaaccttggttgtcctcgggaagccaaggtgcagcagtt
gttacaccagtacagcaacctcaacagccttctcctgctccttctgctgataatactaca
aatgttcctagcggaacacagcaatcctcatctgactggcaagaacatacatcggctgat
ggaagaagatattattacaacaaaagaacaaagcaatctagttgggagaagcctttagaa
ttgatgacgccaattgagagagctgatgcatcaactgtttggaaggaatatagttctcca
gatggaagaaagtattattacaacaaagttacgcggcaatcgaagtggacgatgcctgag
gaattaaagttggctcgtgaacaagctcagaaagaagctagccagggaaatcaatcagat
acgggtttgacctctcacacccctgttgcagttgcttcagctggaacatccattgtggct
actaattcagtgggcactagcactcctacagcaccaactggggtagcattgagccctgtt
gctgttacacctgtggcttcttcagctaatcctcccctgataggttctggatcatcagcg
gctcctggtgcacagtcttccgtaccaggtgctgtgggagttcaacctcccatggtaact
gcaactcccctgccccctactgtttcaggaactactggaactcctgccaacacaacttca
atgagtcgagcatctcaagatattacaaattcaaaagacggagcttctaaacaggacatt
gaggaagcaaggaagggcatggcagttgctggaaaaatcaatgtaactcctatagaggaa
aagtcaccagatgaggagcccttggtatatgtcaataagctggaggcaaaaaatgcattc
aaatcacttctggaatctgcaaatgttcaatctgattggacttgggaacaggcaatgaga
gaaattattaatgacaaaagatatggtgcgctgaaaacattaggtgagcggaagcaagct
tttaatgagtacttgggtcaaaggaaaaaattggaagctgaagagagacgcatgaggcag
aaaaaagctagagaagagtttacaaaaatgctggaagagtccaaagaacttacttcatcc
accagatggagcaaagctgtaactatgtttgaaaatgatgaacgttacaaagccgtagag
cgagctagagatcgagaagatctttttgaaagctacattgtggaacttgagaggaaggaa
aaggaaaaagctgccgaagagcacaggcggaatatagctgaatacaggaaattcctggaa
acttgcgactttattaaggtgaacagccagtggcgtaaagttcaagatcgattggaggat
gatgagagatgcttgcgtcttgaaaagcttgaccgcttgctcatttatcaggattatata
cgtgacctggagaaggaggaagaggagcaaaagaagatacagaaggaacatttgaggcgg
gttgagaggaggaatcgtgatgagtttcgcaagcttttggaagaccatgtggctgctggt
actcttacagctaaaactcactggcgcgattattgtttgaagatcaaggagttgcctcaa
tatcaagctgttgcatcaaatacttctggttcgacaccaaaagatctgtttgaggatgtt
gctgaagaattggagaaacagtatcatgaagataaaactcgtcttaaagatgcaatgaag
attgggaagattacctttgcatccacttggacatttgaagattttaagaatgcagtttct
gaagaaactggttctcccccagtatcagatatcaacataaagcttgtatatgaggagtta
ttggagagagcgaaggagaaagaggagaaagaagctaagaaacgtcaacgccttgccgat
gacttcaataagcttttatacacattcaaggaaataacggtatcttctaattgggaggat
tgcaagcaactttttgaagatagccaagagtacagatcaattggtgaggagagcttgagg
agggagatttttgaggatcacattgcgcatctacaggagaaagctaaagagaaagaacgc
aagcgtgaggaggaaaaggccagaaaagataaagagagagaggagaaagacaagcggaag
gagaaagagaaagagaaaaaagagaaggagaaggagaaggagaaggagaaggagaaggag
cgtgaaaaagaaaagggtaaggaacggtcgaagaaggatgaaaccgatagtgagaatgta
gatatgactgatagtcatagtcataaagaggataagaaaaaagaaaaagacaaggaaagg
aaacatcgaaagcggcatcaaagtgccacagatgacatgggttctgataaggatgagaaa
gaggagtctaagaagcgcagacatggcagtgaccgcaaaaaatcgagaaaacatgcatat
tcacctgaatcagacaatgaaagccggcatagaagacataaaagagagcatcgggatggt
tctcgtagaaatggcggatacgaggaacttgaagatggggagttgggcgaagatggtgaa
atccagtag

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