KEGG   Ziziphus jujuba (Chinese jujube): 107421042
Entry
107421042         CDS       T04794                                 
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B isoform X1
  KO
K11267  sister chromatid cohesion protein PDS5
Organism
zju  Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:zju00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:zju03036]
    107421042
   03400 DNA repair and recombination proteins [BR:zju03400]
    107421042
Chromosome and associated proteins [BR:zju03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Other sister chromatid cohesion factors
    107421042
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Shu complex and associated proteins
     107421042
SSDB
Motif
Pfam: PDS5 HEAT_GCN1_C HEAT_2 HEAT_GCN1 TPR_DNAAF5 HEAT_DAAF5
Other DBs
NCBI-GeneID: 107421042
NCBI-ProteinID: XP_048332268
UniProt: A0ABM3INL2
LinkDB
Position
5:join(13091991..13092086,13092883..13093113,13093290..13093471,13093790..13093922,13094827..13095048,13095194..13095410,13095505..13095650,13095731..13095888,13095972..13096121,13096204..13096252,13096730..13096918,13097644..13097817,13098935..13099074,13099917..13100043,13101302..13101442,13101543..13101611,13102658..13102806,13103609..13103726,13105126..13105260,13105357..13105553,13105660..13105807,13105915..13106055,13106137..13106226,13106333..13106794,13106888..13106955,13107028..13107079,13107508..13107594,13108161..13108204,13109484..13109575,13111195..13111274,13111396..13111434)
AA seq 1441 aa
MDEAALQLVSEIGTQLGQQSRPIKGFIVKSLRQAASALSQLEQPNFPDATKKLEAAKKLE
AGIKPLKRSIIHGLLQHKDKDVQLLVAICVSEMFRVLAPEPPFEDEYLRDIFKLILNTFA
ELADTTSPFFSRRVKIIETVSRCKCCVIMLDIDCNDLVMEMFNIFFSVVREHHQKSLISD
ILSIMSHILHEEASEQLLDVILRNLLKEDKASVGGTPSASSKLAISLIQTCSENLGPFIC
GFLTSCILDRDAVVSELKEFYHEIIFRIFQCAPEMLLAVIPNVTQELLTDQVDVRIKAVN
LIGKFFSLPEHRIAQKYHDLFIEFLKRFSDKSAEVRVSALQCAKICYMANPSGPESEDVL
TALEGRLLDFDDRVRMQAVIVACDLARSNLKIFPPKLIFQAMERLRDKKIPVRKKALQKL
MELYCDYCNKCSEGLMGISDNLEKIPCKILMLCYDKDCKEFRSQNMELVLAEDLFPPSLS
VSERTRHWIHLFSLFTPHQLKSLNSILSQKRRLQNEMQTYLALKKKEKENCLEEMQNRYR
TSFMKMAACFTDPSKAEECFLKLNHMKDNNIFNTLAHLLDELHYTNSQTIRAKFLNMIGN
KHQNLEFLRTLSLKCSHNIFSSEHVSCILDHLSSNRNKNFEASSVRFLQTVTSLFPMLLK
GSEKQFQNLLEESNTVDDKLIEVLAIAGPHISVKLSEIYPFLERLCLEGTRMQSKFAVSA
IAALTDSSKQLVFSNLCKGLVESLHIGRNVPTVLQSLGCLAQYSVSAFETQNGEITQLIH
EKIFQMDLSDGQSSFDDTYGCTNSCKLKIYGLKTLVKSFLPHQGTKVQRKINELLDLLSL
MLQKGDTCDGVISENSFSESEKACIRLAAAKSVLQLSRRWDLHFSPEIFRFTISMAKDES
SSVRRSFLDKTYKLLKEHAIPSRYACAYALATSDSLKDLKEDSFKYMAEFVREYGREARI
RQTSEVQQGLIIDFPACIVIFLIHLLAHDRDYPSEDCQDEITYAKFCSPLFFVLQALLNA
SNVNGDMEVVKEAVLYLLCIFRAIKKAEDAVDADKTPKLHMLSDIGFSFVAAVNRSSISS
SHAPGQILLPSSLYRIGPANKNDEANSRCLIIKSCLDEFFVRRVIHIFKSQISMPDSILP
KHGRTYQEDRTQSDILKENLLNFPSCKVVDLTIAGTTENQKAAKQDLSIRNRRKLSASGA
PESVGLHGCSILHDGASKKSKPCLEKEQLSSSCGSVPIKPCLTELHGPSQNMEANSVSLK
ESVGVNRRTLAENSKYSNAKYKDSCSSKDTINKGEALIGQRIRLSSPVDRCFYSGTVDGY
SSLNNTHKIICDSGDVDVVCLDSESWEMISDGSLVERVVSAEDSDTFVMQQCDMGKHSSF
SDPEIPLDTFGEVAAKRQKILAGVEKKKKRQKASTETFMSEVVDVNKDAVLRRSRRQKVK
T
NT seq 4326 nt   +upstreamnt  +downstreamnt
atggacgaggccgctctgcaactcgtatcggaaattggaacacaactcggccaacaaagt
cgtccgattaagggtttcattgtcaaatcgcttcgacaagctgcaagtgctttatcgcag
ttggaacagcctaattttccagatgcaaccaaaaagttggaagctgctaaaaagctagaa
gctggaataaaacccttgaagagatctatcattcatggcttgcttcaacataaagataag
gatgttcagcttctagttgcaatatgtgttagtgaaatgtttcgtgttctggcaccggaa
ccaccttttgaagacgagtatctgagggacatttttaaacttatcctcaatacttttgcg
gagctagctgataccacgagtccgtttttttcaagaagggttaaaattatagagactgtc
tcaagatgtaaatgctgtgtaataatgttggatattgattgcaatgatctagttatggag
atgttcaatatctttttctctgttgtgagagagcatcatcagaagagtttgattagtgat
attttgtctataatgagtcatattctgcacgaggaagcttctgagcaacttttggatgtg
attttgcgaaatcttttgaaggaagataaggcgagtgttggaggaacaccatctgcttct
tctaagctagctatttctttgattcagacttgctcagaaaaccttgggccctttatttgt
gggtttttaacatcttgcattttggatagagatgctgtagtgagtgagttgaaagaattt
taccacgaaatcatctttagaattttccagtgtgctcctgagatgcttcttgctgttatt
ccaaatgtgactcaagaattactgactgatcaggttgatgtccgaataaaagctgttaat
ctgattggaaaatttttttcattgcctgagcaccgtattgctcaaaagtaccatgatctt
ttcatagagttcttgaaaagattctctgataaatctgcagaagttagagttagtgctctt
caatgtgctaaaatttgctacatggccaatccctctgggccagaatcagaggatgttctc
actgcccttgaaggtcgactcctagattttgatgatagggtgagaatgcaagcagtgatt
gttgcctgtgatcttgccaggtctaacctgaaaattttcccacccaaattaatatttcag
gctatggaaaggcttcgtgataagaagatacctgttagaaaaaaggccctgcagaaattg
atggaattatattgtgattattgtaacaaatgttctgaaggccttatgggaataagtgac
aacttagaaaaaatcccatgcaaaattttgatgctttgctatgataaagactgtaaagag
ttcaggtcccaaaacatggaactagttttggcagaggatttatttcctccttcactttca
gtttcggagaggacaaggcattggatccatttgttttctcttttcactcctcatcagctg
aagtcactgaactctatattatcacagaaaagaaggttgcagaatgagatgcaaacttat
ttggctctaaaaaagaaagagaaggagaattgtctggaagagatgcagaatagatacaga
acgtcattcatgaaaatggcagcttgctttacagatccttccaaagcagaagagtgcttt
ctgaaactgaaccatatgaaagataataacatttttaatacactggcccatttattagat
gaactacactatacaaattcacagaccatcagagctaagtttctgaatatgatagggaat
aaacatcaaaatttagagtttctgcgaacgctttcgttgaagtgctctcataatatattc
agctcagagcatgtcagctgtatattagatcatctttcaagtaatagaaacaaaaatttt
gaggcttcttctgtcagatttcttcagactgttaccagccttttccctatgctcctgaaa
ggttcagaaaagcaatttcagaatttgttagaagaaagtaatacagttgatgataagttg
attgaagtgttagcaatagcaggtcctcatatatctgttaaactcagtgaaatttaccct
tttttggagagattatgtttggaaggaactcgcatgcagtccaagtttgcagtttcagca
attgctgcattaacagactcttctaagcaattagttttttcaaatctatgcaagggactt
gtggagtctctacatattggacgtaacgttccaacagtgttgcaatccttgggatgtctt
gcgcaatattctgtttcggcatttgaaactcaaaatggagagatcacacagcttatacat
gagaaaattttccaaatggacttgtcagatggtcaaagttcatttgatgatacttatgga
tgcaccaattcttgcaagctgaagatatatgggctgaaaacacttgtcaagagttttttg
ccacatcaaggaactaaagtccaaaggaaaattaatgaattattggatctattgtcctta
atgctgcaaaagggggatacttgtgatggtgtaatttcagaaaatagtttcagtgaaagt
gaaaaagcttgtattagattagcagctgcaaagtctgttctccagctttcacgaagatgg
gacttacatttttctccagagatttttcgttttacaatatcaatggcgaaggatgaatcc
tcttctgttagaagatcatttcttgataaaacgtacaaactattgaaggagcatgctatt
ccaagtagatatgcatgtgcttatgcactggccacctcagattctctcaaagatctaaaa
gaggattcatttaaatatatggcagagtttgtcagggaatatggtagagaagctagaatc
cgtcaaacttctgaagtccaacaaggattgatcattgattttcccgcatgcattgtgata
ttcttgattcatcttcttgctcatgacagagactaccccagtgaagactgtcaagatgaa
ataacatatgctaagttttgcagtccacttttttttgtattgcaggcattacttaatgct
agtaatgtcaatggtgacatggaagtggttaaggaggctgtcttgtatttgctttgtatt
ttccgtgcaattaagaaagctgaggatgctgttgacgctgacaaaactcctaagctgcac
atgctgtcagacattggattctcttttgttgctgcagtaaatcgtagcagcatttcctca
tcacatgcccctgggcaaattttgctaccatcgtcactgtatagaataggtcctgctaac
aaaaatgatgaggccaattcaaggtgtcttattattaaatcctgtttggacgaatttttt
gttagaagagttattcacatatttaaatctcaaatctctatgcctgacagcattcttcct
aaacatggtcgaacatatcaagaggacaggacacaatcagatattctcaaggaaaacttg
ttgaacttcccatcttgcaaagtagttgatttgaccattgctggaacaacagaaaaccaa
aaagctgccaagcaagatcttagcatcagaaataggcgaaaactgtctgcctctggtgct
cctgagtcagttggattgcatgggtgttctattctccatgatggtgcatctaaaaagtcc
aagccatgtcttgagaaagaacaactttcatcttcttgtggttctgtgcctattaaacct
tgtctaaccgaattgcatggtccatcccaaaatatggaagcaaattctgtttccttgaaa
gaaagtgttggtgtaaataggagaactttagctgaaaattccaaatactccaatgctaag
tacaaggactcttgcagttcgaaagacactattaataagggtgaagcattaattggacag
cgaatcagattgtcgtctccagttgatagatgtttttattcaggcacagtggatggttat
agttctctaaacaatactcacaagatcatatgtgatagcggcgatgttgacgtagtatgc
ttagatagtgagagctgggagatgataagtgatggttctctagtggaaagggttgtatca
gctgaggactctgacacctttgttatgcagcaatgtgatatggggaagcactcatctttc
agtgatccagagatacctcttgatacgtttggtgaagttgcagccaaacggcaaaagata
ttagcaggtgtagagaagaaaaagaaaaggcagaaagcttctacagaaaccttcatgtca
gaagttgttgatgtgaataaggatgctgtccttagaagaagtcggagacaaaaagttaaa
acatga

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