Ziziphus jujuba (Chinese jujube): 107421212
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Entry
107421212 CDS
T04794
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03013
Nucleocytoplasmic transport
zju03015
mRNA surveillance pathway
zju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107421212
09122 Translation
03013 Nucleocytoplasmic transport
107421212
03015 mRNA surveillance pathway
107421212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107421212
03041 Spliceosome [BR:
zju03041
]
107421212
Enzymes [BR:
zju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107421212
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107421212
Spliceosome [BR:
zju03041
]
Complex C
Other components
EJC/TREX
107421212
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107421212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
107421212
NCBI-ProteinID:
XP_015885884
UniProt:
A0A6P3ZZV8
LinkDB
All DBs
Position
5:complement(join(16511931..16511941,16512970..16513033,16513155..16513238,16514035..16514179,16515084..16515268,16515348..16515404,16516044..16516162,16516269..16516500,16516628..16516800,16517668..16517768,16518237..16518352))
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AA seq
428 aa
AA seq
DB search
MGETRENDVYDEELVDYEEEEEKAPDSVAAKANGEAAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALV
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLAECNFPSICIHSGMSQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNDVQERFEVDIKGLPDQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacaagggagaacgatgtgtacgatgaggagctcgtcgactacgaagaagaa
gaagagaaggcccctgattccgtcgctgccaaagcaaacggcgaagccgcgaagaagggc
tatgttggaatacacagttcagggttcagagacttccttttaaagccagaacttctacga
gctattgtggactctgggtttgagcatccatctgaagtgcaacatgaatgtatccctcaa
gctatcctggggatggatgtcatatgtcaagctaaatctgggatgggaaaaactgctgtc
tttgttctgtcaacactgcagcagattgatcctgttgcaggtcaagtttctgctctggtt
ctgtgtcatacaagagagttggcttaccagatttgtcacgagtttgagaggttcagcact
tacttgcctgatcttaaggttgctgtcttttatggaggtgtcaacatcaaactccacaaa
gatttgcttaagaatgagtgccctcatattgttgttggaacgcctggaagaattctggct
ttagcaagagataaggatctttccttgaagaatgtgaggcattttatcctggatgaatgt
gacaagatgcttgagtcacttgacatgaggagagatgtgcaagagattttcaagatgaca
ccacatgataagcaagttatgatgttttctgctacactcagcaaagaaatccggccagtt
tgcaagaaatttatgcaagatcctatggaaatttatgttgatgatgaggccaagttgact
ctgcatggacttgtgcagcactacatcaagttaagtgagtcggagaaaaaccgcaagttg
aatgatctccttgatgcgttggatttcaaccaagttgttatttttgtcaaaagtgtgagc
agagctgcagagttgaacaagttgcttgctgagtgtaatttcccctctatatgtatccac
tcgggcatgtcgcaggaagaaaggttgaagcgctataaaggtttcaaggagggacagaac
aggattctggttgccacagatttggttggaagaggcattgacattgaacgtgttaatatt
gtgattaattatgatatgccagattcagctgatacttatctgcatagggtcggcagagct
ggtagatttggcaccaaaggacttgctatcacatttgtgtcatctgcttccgactctgat
gttctgaatgatgttcaagagagatttgaggtggatataaaggggcttcctgaccaaatt
gatacttctacatacatgccatcataa
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