Ziziphus jujuba (Chinese jujube): 107421388
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Entry
107421388 CDS
T04794
Name
(RefSeq) cleavage stimulating factor 64 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107421388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107421388
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107421388
U7-dependent histone pre-mRNA processing factors
107421388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
RRM_7
RRM_10
partial_CstF
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
107421388
NCBI-ProteinID:
XP_015886102
UniProt:
A0A6P3ZWH6
LinkDB
All DBs
Position
5:complement(join(26403676..26403825,26405751..26406101,26406617..26407153,26407253..26407288,26408189..26408266,26408345..26408580,26408684..26408717,26408990..26409164,26409589..26409667,26409939..26409969))
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AA seq
568 aa
AA seq
DB search
MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKGADRTRDQGRGGPGLSANVDPQKQVGGPATHGE
SGQHQPIGLHIAITAAAVMAGALGGVQQSNQIGLQGQSALANDPLTLHLAKMSRSQLNEI
MSELKAMATQNKELARQLLLDKPQLPKALFQAQIMLGMVSPQMLQMPNIRQASGRSSQPP
LHDGRPGQLSAVQIHPGLPPPAQSKLQSGLMPKLQESQVSTVPQNSLVHNQFSASPQPPM
QPQIQLPIHANHHALQPATLSGQSVVSTLPPIQPQSTSSLSVRPQIQVANASSSNQQMPH
LPKYPGQVGTVNLGLSSQMVHTNATLKSSLVPRPTLSDAGYQPGPSISSGILQTINRDAD
RPAQVAENTTWAHRINTHPNMPLGLAKQTSMVSDPLQSINHPAKMRKLDDGRNSSYSGAN
LNVSNVNGAATSQVFGTGSLPGNTAPKPEEVHSEKQISQPQPPLDVESTLLQQVLSLTPE
QLSSLPPAQQEEVLQLQKMLRREQIQPS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttctcagcaccgttgcgtttttgttggaaatataccatatgatgccaccgag
gagcagcttatagaaatctgccaggaggttgggcctgttgtatctttcagattagttatt
gatagggagactggaaagccaaaaggttatggattttgtgaatataaggatgaagagacg
gcgctaagtgctcggcgtaaccttcagggttatgagatcaatggccggcagctaagggtt
gactttgccgaaaatgataaaggtgctgatagaactcgagaccagggacggggtggacct
ggactttctgcaaatgttgaccctcaaaaacaagtgggtggcccagcgactcatggggaa
tctggtcagcatcagccaatcggacttcatatagcaataactgctgcagctgtcatggca
ggagctctaggtggtgttcagcagtcaaatcaaattggcttgcagggtcagtctgcattg
gcaaatgaccctttaactctacatctggccaaaatgtctagaagtcagctaaatgaaata
atgtctgagctcaaggcaatggctacgcaaaataaggaactagctcgtcagctattgctt
gataagccacagttgccaaaagcactttttcaggcgcagatcatgctaggaatggtgtcg
ccacagatgttgcagatgccgaatattaggcaagcttcgggtcgatcctcacagcctcca
ctacatgatgggcggccaggtcaactgtctgctgttcaaattcatcctgggctaccccct
ccagcacagagtaaactgcagtctggtttgatgcccaaattacaagaaagtcaagtttct
actgtgcctcaaaattctttggttcataatcagttttctgcatctccacaacctcctatg
cagcctcaaattcagcttccaatacatgcaaatcaccatgctttacaaccagccacattg
tcagggcagtctgtggtttcaactcttcctcccatacagcctcagtcaacaagcagtttg
tccgttcggccacaaattcaggtggcaaatgcctcttcttcgaaccagcaaatgccccat
ttaccaaaatacccaggccaggtgggaactgtaaatttggggctcagttctcagatggtt
catacaaatgccaccttgaaatcttctcttgtacctcgtcctactttgtcagatgcagga
tatcagcctggcccctcaatatcatcaggtattttgcaaacaattaacagggatgccgat
aggccagctcaagttgctgaaaatacaacttgggcccacagaattaacacacatccaaat
atgcctctggggttagctaagcaaacaagcatggtttctgatcctttgcaatcgattaat
caccctgcaaaaatgagaaagctggatgatggaaggaactcctcttactcaggggcaaat
ttgaatgtgtctaatgttaatggagctgcaacgtcccaagtatttggaactggctcattg
cctggaaacactgctcctaagccagaagaagtgcattctgaaaagcaaatatctcagccg
cagcctccattggacgtggagtctaccctactgcaacaagttctgagcctaacacctgag
cagttgagttcactgccaccagcacaacaagaagaagtgttacagctccaaaagatgctt
cggcgggagcagattcagccatcttag
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