KEGG   Ziziphus jujuba (Chinese jujube): 107421396
Entry
107421396         CDS       T04794                                 
Name
(RefSeq) uncharacterized protein LOC107421396 isoform X1
  KO
K06100  symplekin
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107421396
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107421396
   03019 Messenger RNA biogenesis [BR:zju03019]
    107421396
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     107421396
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     107421396
    U7-dependent histone pre-mRNA processing factors
     107421396
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N CRM1_C
Other DBs
NCBI-GeneID: 107421396
NCBI-ProteinID: XP_015886110
UniProt: A0A6P4AJY4
LinkDB
Position
5:join(22900074..22900276,22900884..22901043,22901392..22901484,22903220..22903322,22903481..22903652,22910615..22910789,22911583..22911711,22911806..22912405,22912516..22913136,22913996..22914064,22915919..22916029,22916138..22916383,22916953..22917000,22918041..22918184,22919395..22919559,22919642..22919704,22920599..22920709,22920851..22920934,22921030..22921077,22922310..22922384,22922722..22922817,22923644..22923724,22923815..22923886,22925481..22925525,22925640..22925723,22925822..22925925,22926263..22926380)
AA seq 1339 aa
MAGAPRDQALSLLATANNHGDLAVKLSSLKQAKDILLSVEPSSAAELFPYLVELQSSPES
LVRKSLVEVVEEIGLKAREHSSVLMPLLLTFLKDGDSIVAKQAIVCGTNFFCSVLEEMAL
QFHRHGKLERWLEELWSWMTKFKDAVLVVALEPGSVGTKILAFKFLETYVLLFTPDIDDS
ERPSAEDVTGSRRAFNVSWLVSGHPVLDPYLLMSEANRTLGILLNLLRTAGSLPGSLTIT
IVNCLAAIGRKRSNHYNTILSALLDFDPNFETVKGCHTVSIQYSVRTAFLGFLRCTNPAF
VESRDRLLRALRAMNAGDAADQVIRQVDKMIKNSERASRDARLGKDDQLSSQVLASGDLF
KKRSMPLDNDASANAHDVAFKRTRYGSEAYMASPVQFNDFRRDEASGNGLSTDLPLLDGE
LTPVEKMIAMIGALLAEGERGAESLEILISKIHPDLLADIVITNMRHLPKSPPPLARLGN
LPVSRQISPLSSQAQVMVGPPANSVQSPTLSSQMPFSSATITSSVVSDTPGVNNLPTDLK
RDPRRDPRRLDPRRVAVPAGLASAPTVEDTNVMLSEFDGPYSLAKPNSVPATTSVENSPV
PLISKMNSDEIFESPLVSGTGQLTPEEVLEGPEEIAPPQQLNEFSDVIDSPIRTPDEDSV
AVNLSDIPVKEEADTSSSLEFDHHSPVLSNTSASEDTCQDLPQLPIYVELTQEQQQGVRK
LAIERIIESYKHLCVTDYNQMRLELLARLVAQIDANDDVVMLLQNHIIMDYHEQKGHELV
LHVLFHLHSLTISDPIQNTYPAVVYEKFLLAVTKSLLDSFPASDKSFSKLLGEVPILPDS
ILRLLDDLCYSNVTDQHGKNIRDVERVTQGLGAVWSLILGRPQYRQDLLDIALKCAVHTQ
DEIRAKAIRLVANKLFQLSYISENIEQFATNMLQSVHRGVSDVEHLQYGSTEQRAEGEVG
SQETSVSGSQISESGNSENNSTSQAHLVSQSSTTMSLPEVQRAISLYFALCTKKPNLLQL
VFNIYGQSTKTVKQAFHRHIPILIRALGSSYSELLHIISDPPQGSENLLALVLQILTQET
TLSSELIATVKHLYETKLKDVSILIPMLSSLSKNEVLPIIPRLVGLPLDKFQMALARILQ
GSAHTGPALTPAEVLVAIHGIVPERDGVALKKITEACSACFEQRTVFTQQVLAKALSQMI
DQTPLPLLFMRTVIQAIDAFPSLVDFVMEILSKLVRKQVWRLPKLWVGFLKCVSQTQPHS
FNVLLQLPPPQLESAVGKHPNLKVALANFASQPSVKASLPRSILSILGLTNEMHAQQSHL
SSSFHPSDTSSSVQGTTQT
NT seq 4020 nt   +upstreamnt  +downstreamnt
atggctggagctcccagagaccaagcactctctctcctcgccacggctaacaaccatggc
gatttggccgtgaagctctcgtctctgaagcaggccaaagatatcctattgtccgtcgag
ccgtcttcggcggccgagcttttcccctacttggttgagctccagtcctctcccgaaagc
cttgtccggaaatcgctcgttgaggtagtggaagagattggattaaaagcaagggagcat
tcttcagtgctaatgcctcttctattgacattcttaaaagatggtgactctattgttgca
aagcaggctattgtttgcggcactaatttcttttgtagtgttttggaggagatggcattg
cagtttcatcgacatggtaaattggagagatggctcgaagaactttggtcgtggatgact
aagttcaaggatgctgtgttggttgttgcattggagcctggttcagttgggacaaagatt
ctggcattcaaatttttggaaacatatgttttactatttactcctgacatcgatgatagt
gaaagaccttctgcagaagatgttacaggaagcaggagggcatttaatgtttcatggctg
gttagtggtcacccagttcttgacccatacttgcttatgtcagaagcaaataggactctt
ggaattctattaaatttgttgcggacagctggtagcctacctggttccttgacgattact
attgtcaattgtcttgcggccataggaaggaagagatctaatcactacaataccattctc
tcagccttgcttgattttgatccaaactttgaaacagtgaaaggatgtcatactgtcagt
attcaatattctgtgagaactgcctttttgggattccttcggtgtactaacccagccttt
gtggagtcaagagataggttgcttagggctcttcgagcaatgaatgctggggatgcagct
gatcaggttatccggcaagttgataaaatgattaagaattctgagcgtgcttctcgtgat
gctcggttgggcaaggatgatcaactgtcaagccaggtacttgcttcaggggatctgttt
aaaaagagatccatgcctcttgataatgatgcctcagctaatgcccatgatgtggctttt
aaaagaactcgttatggttcagaggcctatatggcttcaccagtacaatttaatgatttt
aggagggatgaagcttctggtaatgggctgtccactgatttaccattgttggatggtgaa
ttgactcctgtggagaagatgattgctatgattggtgctttacttgctgaaggagaaaga
ggtgctgaatcattggaaatccttatttcaaaaattcatcctgatttattggctgatatt
gtcataactaatatgcggcatttgccgaagtcacccccacccttggcaaggcttggaaac
ttgccagtatcacggcaaataagtcctttaagtagtcaagcacaagttatggttggacct
ccagcaaattctgtgcaatctcctactctttcttcccagatgcctttctcttcagctact
ataacaagttcagtggtctctgatactcctggtgtgaataatcttcctactgatttgaaa
cgtgatccacgacgggatccccgtcgcctggatccacggcgtgtagcagtacctgctgga
ctggcatcagcacctactgtagaagatactaatgttatgctatctgaatttgatggtcct
tattctttggctaaacctaattcagttcctgctacaacatcggttgaaaattctccagta
cctctcatctctaaaatgaatagtgatgagatttttgaaagtccattagtttctgggact
ggtcagctaactcctgaggaggttttggaaggacctgaggaaattgctcccccacaacaa
ttaaatgagttttcagatgtcattgattctcctatacgcacacctgatgaggactcagtt
gctgtaaacttgtcagatattccagtgaaagaggaggctgatacatcatcttctctggaa
tttgatcatcattctccggttctttcgaacacatctgcatctgaagatacctgtcaggat
ttaccccagcttccaatctacgttgagctaacccaagagcagcagcaaggtgtgagaaaa
ctggcaattgagaggattattgaatcatacaaacatttatgtgtcacagattataatcag
atgcgtctagaattacttgcacgattggttgctcagattgatgccaatgatgatgtcgtt
atgctgctgcaaaaccatattatcatggattaccatgaacagaaggggcatgagcttgtg
ctacatgtcttgttccatcttcattctctgacaatctccgatccaattcaaaacacctat
ccagctgttgtatatgaaaagttcctcttggcagtgaccaaatctttgctggactcattt
ccagcatctgacaagtctttcagcaaacttcttggtgaagtcccaattttgcctgattcc
atattgagactactggatgatctttgctattccaacgttactgaccaacatggaaaaaat
attcgtgatgttgagcgtgtcacacagggccttggtgctgtgtggagtttgattttgggg
cgtccccagtataggcaagacctcttagacatagctttgaagtgtgctgttcatacccaa
gatgaaattcgagcaaaagctatccgcctggtggctaacaaactatttcagttaagttac
atatcagaaaatattgagcaatttgcaacaaatatgttgcaatctgtacatcgcggtgtt
tcagatgttgaacatttgcaatatgggtccactgagcaaagagctgaaggggaggttgga
agtcaagaaacatcggtcagtggctctcaaatttcagagtctggaaattctgaaaataat
tccacaagtcaggcacatctagtttcacaaagttcaacaaccatgtctcttcctgaagtt
cagcgagccatttctttatattttgctttatgtacaaagaaaccaaatcttcttcaactt
gttttcaatatttacggacaatctacgaaaactgtgaagcaggcttttcatcgtcatatc
cctattcttataagggccctaggatcatcttattctgagttgcttcacataatatctgat
ccaccgcaaggaagtgaaaatcttttggcactggtactgcaaatattgactcaagagacg
acgctttcttctgaactaatagccactgtgaaacatttatatgaaactaaattaaaggat
gtctctattctcattccgatgctgtcttctctttccaaaaatgaggttttacctataatt
cctcggcttgttggccttcctttagacaagtttcagatggcacttgctcgcatacttcag
ggttcagctcatacaggtccagctttaacacctgcagaagttttggttgctatccatggc
attgttccagagagagatggtgttgcacttaaaaagataacagaggcttgctcagcttgt
tttgagcaacgaacagttttcacacaacaggtcttggcaaaggcattgtcccaaatgatt
gaccaaactccactaccacttctctttatgagaacagttatccaggcaattgatgcattt
ccttcactggttgattttgttatggagatactttcgaaactcgtgagaaaacaggtgtgg
agactgccaaaactttgggttggcttcttgaaatgtgtatctcagacacagccacattct
ttcaatgtgttattacagttaccaccgccgcaacttgaaagtgccgtgggcaaacatcca
aacctcaaagttgcccttgctaattttgctagccagccaagtgttaaagcttcactgcct
agatcaatcctctcgattcttggtcttacaaatgaaatgcatgcacaacaatctcatctc
tcctcatcttttcatccttcagacacaagttcatcggttcaaggaactacacaaacatga

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