| Entry |
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| Name |
(RefSeq) regulator of nonsense transcripts UPF3 isoform X2
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| KO |
| K14328 | regulator of nonsense transcripts 3 |
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| Organism |
zju Ziziphus jujuba (Chinese jujube)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:zju00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107421465
03015 mRNA surveillance pathway
107421465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:zju03019]
107421465
Messenger RNA biogenesis [BR:zju03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107421465
mRNA cycle factors
P-body specific factors
107421465
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
5:complement(join(24902660..24902698,24902793..24902911,24903336..24903843,24904618..24904718,24905476..24905599,24906350..24906448,24908433..24908512,24908812..24908910,24909017..24909112,24909361..24909467,24910058..24910197))
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| AA seq |
503 aa
MKDPLSRTKVVIRHLPPSLSQSDLFHQIDDRFGGRYNWFCFRPGKSSLKHQRYSRAYIDF
KRPEDVVEFAESFDGHVFVNEKGAQYKTIVEYSPSQRAPKLSSKKDGREGTIYKDPDYLE
FLKLIAKPTEHLPSAEIQLERKEAEQAGAAKEALIVTPLMEYVRQKRAVGSGSQGLLVAG
KGSRRGLASAPSKPGTSSAKRVSEKKKYILKDNAKSTSRKDKSNFIVVPRRDEQQATSSR
KETSENEIVSAIEGSVSGLPVIADSGKRKILLLKGKEREISNVPEAILQNHGGISGGNSP
VSSAPKQNQRRESGGRLIRSILLHNEARQSHTSTSLQSQQKSQGLNSEHVKRLPRLSNTR
SGANGHISHSELSTLNSEGDRKRASDDKYMKKDSHGMSNVSEKQEKRTRNKDRPDRGVWT
PFRRADVSNAGDERTSSAVSQPSQLPSDTPEGSHRHLSRRGTVHTIKEDGNLNVGEGKPS
RKGASAHGANEKQVWVQKSSSVS |
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| NT seq |
1512 nt +upstreamnt +downstreamnt
atgaaggacccgctgtcaagaacgaaggttgtcataaggcacttgcctccatctctctca
caatccgatctcttccaccaaatagacgatcgattcggtggccgctacaactggttttgc
tttcgtcctgggaagagcagcctgaagcatcagagatactctcgcgcctacatagacttc
aagagacctgaagatgttgtcgagtttgctgaaagttttgatgggcatgtgtttgttaac
gagaagggtgcacagtataagactatagtagaatattctccttcccagcgtgctccaaaa
ctgagttctaaaaaggatggacgtgaggggaccatatataaagatcctgattatctggag
ttcctcaagcttattgcaaagcccacagagcatcttcctagtgcagaaatacagttggaa
agaaaggaagcagaacaagctggtgctgcaaaagaagcccttattgttacccccttaatg
gaatatgtccgtcaaaaacgagcagttggaagtggatctcagggtttattggttgctggg
aaaggtagcagaagaggtttggcttcagcccctagcaagcctggtacatcgagtgctaaa
cgagtctccgagaagaaaaaatatatattaaaggacaatgcgaagagcacaagtcggaag
gataagtcaaatttcattgttgttcctaggagagatgaacaacaagccacttcaagcaga
aaagaaacatctgaaaatgaaatcgtctctgcgattgaaggttctgtttctggtcttcct
gtaattgctgactctggaaagaggaaaatcctgcttcttaaagggaaagagcgagagata
tcaaatgttcctgaagccatattacaaaaccatggtggaatatctggaggaaattcgcct
gtttcatctgctccaaagcagaaccaaaggcgtgagtctggtggaaggttaatcagaagc
atactcttacataatgaagctcgtcaaagtcatacttcaacctccctccagagtcaacag
aaaagtcaaggtttgaactcagaacatgtgaagcgattgccacggctctctaacacacgt
tcaggggccaatggtcatatctctcatagtgaactgagtacattgaactctgaaggggat
aggaaaagggcttctgatgataagtatatgaaaaaggactcacatggtatgagtaatgtc
agtgagaagcaagaaaaacgtacaagaaacaaggatagacctgatcgtggtgtttggacc
ccttttcgtcgtgctgatgtgtcaaatgctggtgatgagcgcacgtcctctgcagtatca
caaccttctcaactgccctctgatacacctgaagggtctcaccgacatttaagtcgccgt
ggaactgttcatactataaaggaggatggcaacctaaatgtaggtgaggggaagccttct
agaaaaggtgctagtgctcatggtgctaatgagaaacaagtatgggtgcaaaaatcatct
tctgtgtcttag |
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