Ziziphus jujuba (Chinese jujube): 107421570
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Entry
107421570 CDS
T04794
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03015
mRNA surveillance pathway
zju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107421570
09123 Folding, sorting and degradation
03018 RNA degradation
107421570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107421570
03041 Spliceosome [BR:
zju03041
]
107421570
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107421570
mRNA cycle factors
Stress granule specific factors
107421570
Spliceosome [BR:
zju03041
]
Complex C
Other components
Complex C specific factors
107421570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_RdRP1_2
RRM_YTH1
RBD_DGKtheta
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
107421570
NCBI-ProteinID:
XP_015886315
UniProt:
A0A6P4ADL5
LinkDB
All DBs
Position
5:complement(join(25641684..25641908,25642031..25642255,25642598..25642900,25643773..25643862,25643989..25644066,25644175..25644950,25645991..25646276))
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AA seq
660 aa
AA seq
DB search
MASSAVSSPAVQTSNVAAQQPLAAAAAPVPANAAPVTGFGNSSLYVGDLDPNVNEGQLFD
LFNQVAQVVSIRVCRDQARRQSLGYAYVNYGNPQDAANSMEILNYTPINGKPIRIMFSHR
DPSIRKSGYANIFIKNLDTSLDNKALHDTFAAFGTILSCKVAVDKNGLSKGYGFVQYDND
ESAQNAIKQLNGMLINDKQVFVGLFIRRHERSRANGSPKFTNVFVKNLSEATTDEDLKKL
FGTFGTITSAVVARDGNGKSRCFGFINFQSSDAAAAAVEKLNGSIIDDKVLYVGRAQRKA
EREAELKAKFEQERISRFEKLQGANLYVKNLDDSINDEKLKEIFAEFGSITSCKVMVDSQ
GLSKGSGFVAFSTPEEAARALNDLNGKLIGRKPLYVAVAQRKEERKARLQAQFAQIRAPG
GMAPLPSAVPGFRPGAPRLAPQQMYFGQGTPGLMPPQPAGYGFQQQLLPGMRPGVAPNFI
MPYHLQRQGQPGQRMGVRRGGNLQQVQQQQPLLHRNPNQGLRYVASTRNSMDPAVVPQGL
VGPMMPLAFDGSGVPMSTIDIQRSGPVPMSTLASALASATPENQRLMLGEQLYPLVKRIE
PEHAAKVTGMLLEMDQTEVLHLIESPDDLKDKVGEAIEVLHKATSKSDVADQLGALAIRE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcatcggctgtttcttctccggcagtacagacttcgaatgtggcagcgcaacag
cctctggcggcggcggcggctcctgttccggcaaatgcggctccggtgacggggttcggg
aactcctcattgtacgtaggggatctggacccgaatgtgaatgaaggacagcttttcgat
ctgttcaatcaggtggcccaggtcgtttccattagggtttgcagagatcaggctcggagg
caatctcttggttatgcctatgtcaattacggcaaccctcaagatgctgctaattccatg
gagatattgaattatacacctattaatggaaaacctatcaggattatgttctctcaccgg
gatccaagcattcgaaagagtggatatgctaatatttttatcaagaacctggacacttca
cttgataataaggcattacatgacacttttgctgcctttggaactattctttcttgcaag
gttgctgttgataaaaatggtctatcaaaaggttatgggtttgtacagtatgacaatgat
gaatctgcacagaatgctatcaaacaactgaatggaatgttaataaatgacaaacaagtt
tttgtcggactttttattcgacgccatgaaaggagccgagcaaatggctcaccaaagttt
actaatgtttttgtgaaaaatctttcagaggcaactacggatgaggaccttaagaaactt
tttggcacttttggtaccatcacaagtgcagttgttgccagggatggaaatgggaagtcc
agatgctttggtttcattaactttcagagctcagatgcagctgctgctgcagttgagaag
ttgaatggtagcatcattgatgacaaagtattgtatgttgggagggctcaaaggaaagca
gagagggaggcagagttgaaagccaaatttgaacaggaaagaattagcagatttgaaaaa
cttcagggtgctaatctctatgtgaaaaatcttgatgacagcataaatgatgaaaaacta
aaggagatattcgctgagtttggatcaataacatcatgcaaggtcatggttgactcacag
gggctgagcaagggatctggctttgttgccttttctacccctgaggaagctgccagagct
ttgaatgatttaaatgggaagctgattggtcggaaacctctgtatgtggctgtggctcaa
cgcaaggaagagcggaaggctcgcttgcaggcacagtttgctcaaattagagcaccaggt
ggaatggcacctttaccatctgcggtacctgggtttcgtcctggggcacctagacttgcc
cctcaacagatgtattttggtcaaggtactcctggtctaatgcctccccagcctgctggt
tatggtttccagcagcaactcttgcctggaatgcgccctggtgttgccccaaatttcatt
atgccataccaccttcagagacaaggacaacctggacaacggatgggtgtgcgtcgtggt
gggaacctccaacaggtgcagcagcaacagccgttgctgcatcggaaccccaatcaaggc
cttagatacgtggctagcacacggaatagcatggatccagctgtggttcctcaaggtctt
gtgggtccaatgatgccattggcatttgatggttcaggggtgcctatgtctacaattgat
atccagcgatcaggacctgtgcccatgtcaacacttgcttctgcattagcttctgctact
ccagagaatcagagactgatgcttggagagcagctatatcctcttgtcaagcgcattgaa
ccggaacatgcagcgaaggtcactgggatgctgctggagatggatcaaacagaggttcta
catctcatcgagtctccagatgatctgaaggataaggtgggtgaggcaatagaagtcctt
cacaaggctacctcgaagtccgatgttgctgatcagctaggtgcattggccatccgtgaa
tga
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