KEGG   Ziziphus jujuba (Chinese jujube): 107422363
Entry
107422363         CDS       T04794                                 
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03440  Homologous recombination
zju03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    107422363
   03450 Non-homologous end-joining
    107422363
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zju03032]
    107422363
   03400 DNA repair and recombination proteins [BR:zju03400]
    107422363
DNA replication proteins [BR:zju03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    107422363
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     107422363
    BRCA1-C complex
     107422363
   NHEJ (non-homologous end-joining)
    MRX complex
     107422363
SSDB
Motif
Pfam: AAA_23 SMC_N AAA_15 AAA_21 SbcC_Walker_B Rad50_zn_hook AAA_29 ABC_tran AAA_16 AAA_22
Other DBs
NCBI-GeneID: 107422363
NCBI-ProteinID: XP_015887288
UniProt: A0A6P4A1N9
LinkDB
Position
3:complement(join(14239754..14239793,14239933..14240061,14240142..14240275,14240353..14240415,14240511..14240661,14241407..14241459,14241540..14241665,14242404..14242728,14242805..14242974,14244592..14244793,14244993..14245201,14245962..14246171,14246348..14246477,14246625..14246739,14247495..14247622,14249050..14249142,14249231..14249442,14249534..14249641,14249737..14249841,14250243..14250413,14250510..14250688,14250847..14251075,14252107..14252221,14252707..14252882,14253328..14253495,14253619..14253705,14253805..14253927))
AA seq 1316 aa
MSTVDKMLIKGIRSFDPENKHVITFFRPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDSSTLKKKFDDI
FSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDAAYKLRESISQDQEKTESLKG
QMQELERNIQDVDAKIHNAEVTLKDLRKLQEQISTKTAERSTLFKEQQKQYAALAEENED
TDEELKEWKTKFEERIALLESKISKLEREMNDSETKSSFLKKTINEHIWEISKLQMEAEA
HTSLKNERDSTIQKVSASHNLGSVPNPPFSNDVALSLTNRIKSRLMDLDKDLQDKKKSNE
TELKTAWDCYMDASDRWKNVEAQKQAKAEIKSGLLKRIEEKENERDSFELQISNVNLSHI
DEKEKNMRIEVERKTSQLADREFESIIRQKQSELYGIEQNIKAVNREKDIMAGDSEDRVK
LSLKKAELENHKKKQKKIIDEYKEKIKGVLKGRLPPDKDLKKEITQAMRAVTMEFDDVNN
KSREAEKEVNMLQMKIQEANSNLSKFRKDMESRRRYIESKLQALDQQTYTIDFYVQVLDS
AKEKRDVQKSKYNIADGMRQMFDPFERVARAHHMCPCCERSFSAEEEDEFVKKQRAKAAS
SAQHMKVLAVESSNADLYFQQLDKLRVVYEEYMKIKDETIPSTEKDLHEFTEELDQKSQA
LDDVLGVLAQVKADKDLIEGLMQPVETADRLFQEIQMWQKQVDDLEYKLDFRGQGVKSME
DIQLELNTYQNTKDNLHNELEKLRDEQRYMENDLSNLQIRWHSLREEKVKAANVLRDVRK
AEEELERLAEEKSQVDFDEKHLAEALGPLSREKDKLLSDYNELKVKLNREYEEQAEEKRL
YQQEFDSLLKMTSKIKEYYDLKKGEKLKELQERQYQSESQLKSCDARKEDILAELNKSKD
LMRNQDQLRRNIEDNLNYRKTKAEVDALTLEIESLEDRILKIGGISTFEGELVKLSQERE
RLLSEVNRYHGTMSVYQSNISKNKIDLKQAQYKDIDKRYYDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYICIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDSPNAESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVTKDDHQHSIIEAQEIFD
NT seq 3951 nt   +upstreamnt  +downstreamnt
atgagtacggtggataagatgctaataaaagggatacggagctttgaccctgagaacaag
cacgtcatcaccttcttcagacccttaaccctcatcgtcggtcccaacggtgctggcaaa
accaccataattgagtgcttgaagctctcctgcaccggcgagttgcctcccaatgccagg
tctggccacagtttcatccatgatcccaaggttgctggggaaactgagacaaaaggacaa
ataaaactgcgattcaaaacggcagctggtaaggatgtggtgtgtattaggtccttccag
cttacccagaaagcatcaaagatggagtttaaagctattgagagtgtgcttcagactatc
aatcctcacactggagagaaggtttgccttagctatagatgtgctgacatggatagggaa
atccctgctttaatgggtgtctccaaggcaattctggaaaatgttatatttgtacaccaa
gacgaggccaattggccattgcaagattcttccactttaaagaaaaagtttgatgatatc
ttctctgctaccagatacacaaaggcattggaggtgattaaaaaacttcacaaggaacaa
gctcaagaaataaagacctacaaactgaaattggagcatcttcaaacattgaaggatgct
gcatataagcttcgtgaaagcatatctcaagatcaggaaaaaacagaatctttgaaaggt
cagatgcaggagttggaaagaaatatccaagatgtggatgccaaaattcataatgctgaa
gtaacattaaaagatctgaggaagctgcaggaacagatatcaaccaagactgctgagagg
agcactttgtttaaggaacaacagaaacagtatgcagcccttgcagaggaaaatgaagac
accgatgaagaattgaaagaatggaaaaccaagtttgaagaaagaattgcacttttggaa
tctaaaattagcaagttggagagagaaatgaatgactcagagactaaaagttcgttcctt
aagaaaacaatcaatgaacatatctgggagataagcaagcttcaaatggaagctgaagct
catacgtccttgaagaatgaacgagactctactattcaaaaagtttctgcaagccataat
ttaggttctgttccaaatcctcccttcagcaatgacgttgctttgagcctcacaaataga
attaaatcaagattgatggatcttgacaaggatttgcaggataagaagaaatctaatgaa
accgaactcaagacagcttgggattgctacatggatgcaagtgaccgttggaaaaatgtt
gaggctcaaaagcaggctaaagcggaaataaagagcggccttttgaaacgtattgaagag
aaggaaaatgaacgtgattcatttgaacttcaaatttcaaatgttaatctttctcatatt
gatgagaaagagaaaaacatgcgaattgaggttgaaagaaagacaagccagcttgctgac
agagaatttgaatcaatcatacgccaaaagcagagtgagttatatggcatagagcaaaat
ataaaggctgttaatcgagagaaagacatcatggctggggattctgaggacagagtaaaa
ctttctctgaagaaggcagaattggagaaccataaaaagaagcaaaaaaagataattgat
gaatacaaggaaaaaataaaaggagtgctgaaagggaggcttcctcccgacaaggatttg
aaaaaagaaattactcaagccatgagggctgttacaatggagtttgatgacgtgaacaac
aaatctcgtgaagctgagaaggaggtgaatatgttgcagatgaaaatacaagaagctaat
agtaacctttccaaatttcgtaaagatatggaatctaggaggagatatatcgagtcaaag
ctccaagccttggatcaacaaacctatactattgatttctatgttcaagtcttggactcg
gctaaggagaaaagagatgtccaaaaaagcaaatacaacattgcagatggtatgcgacaa
atgtttgatccttttgagagagttgcccgtgctcatcatatgtgcccttgttgtgagcgt
tctttctctgcggaagaggaagatgagtttgttaaaaagcaaagagcgaaggctgcaagt
tcagctcaacatatgaaggtgctggcagtggagtcctccaatgctgatttgtactttcag
cagttggacaagcttcgtgtggtttatgaagaatatatgaaaattaaagacgaaacaatt
ccaagcacagagaaagatttacatgagttcactgaagagttggatcaaaagtctcaggcc
cttgatgatgtgctaggtgttttagctcaagtaaaggcagacaaagacttaattgagggc
ttgatgcaacccgttgaaactgctgataggttattccaagaaattcagatgtggcagaaa
caagttgatgatttggagtataagcttgattttcgagggcagggtgtaaagtccatggaa
gatattcagttggaattgaatacttaccagaatacaaaagataatttgcataatgaactg
gagaagctaagggatgaacaaaggtacatggaaaatgatctatcaaaccttcaaatacgg
tggcacagtctcagggaggagaaagtcaaagctgctaatgtattgcgagatgtcagaaag
gcagaagaagagttggagcgtttggccgaggaaaaaagtcaagttgattttgatgaaaag
catttggcagaggctcttgggcctttatcaagggagaaagataaattattgagtgactac
aatgaactcaaagttaaacttaaccgtgaatacgaggaacaagctgaagaaaaaaggctt
tatcagcaagagtttgattcactacttaaaatgacttctaaaataaaagaatattatgat
ttaaagaaaggagaaaagttgaaggaattgcaagaaaggcaatatcagtcagaatctcag
ctaaaaagttgtgacgctagaaaggaggatattttagctgaactaaacaaaagtaaagac
ttgatgaggaatcaagatcaattaagacgaaatattgaggacaacttgaattacagaaag
acaaaggctgaagtagatgcgcttacccttgaaattgaatctttggaagacagaatactg
aagattggtgggatttccacatttgaaggtgaacttgtaaagctttcacaagaaagagag
agacttctttcagaggtaaacaggtatcatggaacgatgtctgtttatcagagcaatatt
tcaaagaataaaattgatcttaaacaagcgcaatacaaggatattgacaaacggtactat
gatcagctaattcagctcaagacaacagagatggcaaataaggatctggacagatattac
aatgcacttgacaaggcgctcatgcgcttccacacaatgaaaatggaggaaataaataaa
attataagggagttgtggcagcaaacatacagaggacaggatatagattacatttgtatc
cattctgattctgaaggagccgggactcgctcatacagctataaggttcttatgcagact
ggtgatgcggagctggaaatgagaggaaggtgcagtgctggtcaaaaggtccttgcttcc
cttatcataaggttggctcttgcggaaactttttgcctcaattgtggaatactagcactg
gatgaaccaacaacaaacttggatagcccgaatgctgagagtcttgctgcagcactcctt
agaattatggaggatagaaagggccaggagaattttcagctcatagtaattactcatgat
gagcgttttgctcaactaattggccaacgccagcatgcagaaaaatattaccgggtcaca
aaggatgatcaccaacacagcataattgaagcccaggaaatatttgattga

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