Ziziphus jujuba (Chinese jujube): 107423123
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Entry
107423123 CDS
T04794
Name
(RefSeq) uncharacterized protein LOC107423123
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107423123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107423123
03041 Spliceosome [BR:
zju03041
]
107423123
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107423123
Spliceosome [BR:
zju03041
]
Complex B
Other components
Prp19-related factors
107423123
Complex C
107423123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21
CKAP2_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
107423123
NCBI-ProteinID:
XP_015888127
UniProt:
A0A6P4A4A4
LinkDB
All DBs
Position
1:join(20211837..20213355,20214163..20214347,20214451..20214621,20215734..20216186,20216321..20216749)
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AA seq
918 aa
AA seq
DB search
MSMSISTDFYPSQDDLLYEEELLRNPFSLKLWWRYLIARSAAPFKKRFIIYERALKALPG
SYKLWHAYLRERLELVRNLPITHSQYETLNNTFERSLVTMHKMPRIWIMYLQTLTDQKLL
TRTRRTFDRALCALPVTQHDRIWEPYLFFVSQKGVPIETSLRVYRRYLKYDPSHIEDFIE
FLVNSSLWQEAAERLASVLNDDQFYSIKGKTRHRLWLELCDLLTKHATEVSGLNVDAIIR
GGIRKFTDEVGRLWTSLAEYYIRRNLHEKARDIFDEGMTSVVTVRDFSVIFDSYAQFEES
MLAHRMETMDLSDDEEEEQDGGEQNGVEEEEEDEDIRLDVNLSVAEFEKKLLKGFWLHDD
KDIDLRLARLDHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRT
IDPMKAVGKPHTLWIAFAKLYENHNDIANARVIFDKAVQVNYKTVDNLASVWCEWAEMEL
RHKNFNGALQLMSRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGSLE
STRAVYERILDLRIATPQIIINYALLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVSYL
SKFVKRYGKTKLERARELFEHAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYHEATK
AVPNNEKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGE
IDRARGIYVFASQFSDPRSDPDFWNKWHEFEVQHGNEDTFREMLRIKRSVQASYSQTHFI
LPEYLMQKDQRLDLDEAKDKLKQAGLPEDEMAALERQLIPAANDTTTAKDSSRKVGFVSA
GVQPEADGGITTTNREDIELPEGSDSEDDERVEIAQKDVPDAVFGDLAQKRKDAEAPTDK
DGESRLGALERLKRQKRA
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgtcgatttcgacggatttctatccatcccaagatgaccttctatacgaagaa
gagcttcttcgaaacccattcagcttgaagctatggtggagatatctcattgctcgttcc
gcagccccattcaagaagcgctttattatctacgagcgagccctcaaggctctccctggc
agctacaagctatggcacgcttatctccgcgaacgcctcgaactggttcgaaacctaccc
atcactcactcccagtacgaaaccctcaacaacaccttcgagcgctctctcgtcaccatg
cacaagatgcccagaatctggatcatgtacctccagactctcacggaccagaagttgctc
actcggactcgccggaccttcgacagggctctctgcgctcttcccgtgacccagcacgac
cgtatttgggagccctacctcttcttcgtcagccaaaagggtgttcccattgagacctcg
cttcgcgtttatcggaggtatttgaaatacgacccttcccatattgaagattttattgaa
ttcttggttaattctagtctttggcaagaggctgctgagaggttagcttctgtgttgaat
gacgaccagttttattcgattaaggggaagactaggcatagattgtggttggagttgtgt
gatttgcttaccaagcatgctacagaggtttcggggttgaatgtggacgccataattaga
ggtgggattaggaagtttactgatgaagttgggcggctatggacctcccttgcggagtat
tacattaggaggaatttacatgagaaggctagggatatctttgacgagggtatgactagt
gttgtgactgtgagagattttagtgtgatttttgattcatatgctcagtttgaggagagt
atgcttgctcataggatggagactatggatttgagtgatgatgaggaggaagagcaagat
ggtggagaacagaatggggttgaggaggaggaggaggatgaagatattcgcttggatgtt
aatctctctgtggccgagtttgagaagaagctgttaaaaggcttttggttacacgatgat
aaggatattgatttgaggttggccagactagaccatctcatggacagaagaccggaatta
gctaacagtgttcttttaaggcaaaatccacataatgttgaacagtggcatcgaagggta
aagctctttgagggtaatcccacaaagcagattcttacttacactgaggcagtgaggaca
attgatcccatgaaagcagttgggaaacctcatacattgtggattgcttttgcaaagttg
tatgagaaccacaacgatattgctaatgcaagagtaatctttgataaagcagtacaagtg
aactacaagacagtggataacctggctagtgtttggtgtgagtgggctgaaatggaattg
aggcataaaaattttaatggagcactgcaactgatgagtcgggcaacagcagagccatct
gttgaggtcaaaagaagagtggctgctgatgggaatgaaccggttcagatgaagctccat
aaatccttgagactttggacattttatgtggacttggaggaaagtcttggtagtttggag
tctactcgagcagtttatgagaggatattggatttaagaatagccacaccacaaattata
atcaattatgcactgcttcttgaagaaaataagtactttgaagatgcattcaaggtatat
gaacgaggtgtcaagatattcaagtaccctcatgtcaaagatatatgggtgtcatatctc
tctaaatttgttaaaagatatgggaagacaaaactggaacgagcaagagagctatttgag
catgctgttgaaacggctcctgctgatgcagtgaaacctttatatcttcaatatgccaag
ttggaggaagattatggtttggcaaagcgtgctatgaaggtgtatcatgaagcaaccaag
gctgtaccaaataatgagaaattgagcatgtatgaaatctacattgcacgtgcagctgag
atatttggcgttcccaaaacaagggagatatatgaacaagcaatagaatcgggtcttcct
gacaaagatgtgaagacaatgtgcttgaagtatgctgagctcgagaagagcttgggtgag
attgatcgtgctcgtggaatatatgtatttgcatctcagttttccgatccacgatcagac
ccagacttttggaataaatggcatgaatttgaagtgcagcatggaaatgaagacaccttc
agagaaatgcttcgtattaaaagaagtgttcaagcaagctatagccagacccactttatt
cttccggagtatctgatgcaaaaggatcagaggctagatcttgatgaggcaaaagacaaa
ttgaaacaggctggtcttcctgaagatgagatggctgctcttgagaggcagttaatccct
gcagccaatgatactactactgctaaagatagcagcagaaaagtagggtttgtaagcgcg
ggtgtccaaccagaggctgatggggggataaccaccacaaatcgtgaagatattgagttg
ccagaaggaagtgactcagaagatgatgaaagagttgaaattgcacaaaaagatgttcca
gatgctgtttttggagatctggctcagaaaaggaaagatgctgaagctcccacagacaag
gatggcgagagtcgtcttggggcgcttgagagactaaagaggcaaaagagagcttga
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integrated database retrieval system
