KEGG   Ziziphus jujuba (Chinese jujube): 107423855
Entry
107423855         CDS       T04794                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03022  Basal transcription factors
zju03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107423855
  09124 Replication and repair
   03420 Nucleotide excision repair
    107423855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107423855
   03400 DNA repair and recombination proteins [BR:zju03400]
    107423855
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     107423855
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     107423855
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 107423855
NCBI-ProteinID: XP_015888991
UniProt: A0A6P4A6D9
LinkDB
Position
1:complement(join(21724833..21724967,21725061..21725135,21725300..21725380,21725508..21725598,21726688..21726773,21727262..21727345,21727445..21727528,21728984..21729052,21729383..21729442,21729532..21729577,21729679..21729779,21729969..21730062,21730614..21730682,21731456..21731623,21731836..21731948))
AA seq 451 aa
MPQVKIIAKNFMDMVASLPAMKLDKLYANAFICEAILRSLPPLAKKYVLQMLFIEGPVSA
TSMQEWVLADGVSKHQVAIDRLIQLRLFTETADRKRETTYRLNPVLQANLQKLLTCGEVL
PREPMPPNVTARLPSLEDLEAFALEKWECFLLQLINSSQAEKPTNISSSMMKIFQRGLLS
QREKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGVDPADLISFLLELSFHVTGE
AYNMNTLTDVQSNTIKDLSDLGLVKLQQGRKESWFIPTKLATNLSVSLADSSSRKQGFVV
VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYTAFENGITAEQIISFI
QQNAHPRVAERIPSVPENVTDQIRLWESDLNRIEMTPAHHYDEFPSKEVFEAACDFAREW
NGLLWEDSKKKRLVVKAEIHMHMRDFLRGQK
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgccccaggtgaagatcatagctaagaatttcatggacatggtggcctccttgcccgcc
atgaagcttgacaagctctacgccaatgctttcatctgcgaagccattctaaggtctctg
ccacctctagccaagaaatacgttttgcaaatgttattcattgagggtccagtaagcgcc
acatcaatgcaggagtgggtgcttgcagatggggtctccaagcatcaagttgcaattgat
cggttaattcagttaagattgtttactgaaactgctgacaggaaaagggaaacaacttac
agattaaatcctgtattacaggctaacctccagaagcttctaacatgtggtgaagttttg
ccaagagagccaatgcctcccaatgttacagcacggcttccgagcttggaggatcttgag
gcttttgccctggagaagtgggagtgcttcttgctgcaacttattaactcatctcaagct
gaaaagccaacaaacataagctcttctatgatgaaaattttccagcggggacttttgagt
caaagggagaaagaagctccacgattaacagaaagtggtttccagttcttgctgatggat
acaaatgcacaactttggtatatcatcagagaatatatctctaactctgaggagagaggt
gtagatcccgcagatttaatttcattccttctagagcttagctttcatgtgacaggcgag
gcctataatatgaatacattgaccgatgttcagagcaatacgataaaggacctttcagac
ttgggattagtcaagcttcagcagggtaggaaggagagttggtttatacctactaaatta
gccacaaatctttccgtgagcttagcagattcatcatcaagaaaacaggggtttgtggtg
gtggaaacaaattttaggatgtacgcctactcaacttctaaactgcattgtgaaatttta
cgtcttttctcaaggatagagtatcaacttccaaaccttatagttggagcaataacaaag
gaaagcttgtatactgcatttgaaaatggcataacagcagagcagataatctcttttatt
cagcagaatgcacatcctcgtgttgcagaaagaataccatctgtacccgagaatgttacc
gatcagattaggctatgggagtcagaccttaacaggattgagatgactcctgcccatcat
tatgatgaatttcctagcaaggaggtctttgaggctgcttgcgactttgcccgtgaatgg
aatgggttgttgtgggaggattcaaagaagaagcgtctggtggtcaaggcagaaatccac
atgcacatgcgggattttcttcgcggtcaaaagtag

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