KEGG   Ziziphus jujuba (Chinese jujube): 107424122
Entry
107424122         CDS       T04794                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107424122
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107424122
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     107424122
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR55 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_NOL10_N Beta-prop_EIPR1 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st DSE1_N Beta-prop_TEP1_C NBCH_WD40 Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_SCAP WDR90_beta-prop_4th eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_DCAF12 Beta-prop_WDR41 Beta-prop_SPT8 Ge1_WD40 Cytochrom_D1 TRM82_WD Beta-prop_WDR11_1st Tricorn_2nd CFAP251_N PD40 WD40_like ASA1 Beta-prop_HPS5 CFAP43_N RMC1_N Beta-prop_ACSF4 DUF5711 Beta-prop_pof12 PALB2_WD40
Other DBs
NCBI-GeneID: 107424122
NCBI-ProteinID: XP_015889331
UniProt: A0A6P4A2U7
LinkDB
Position
7:join(1245456..1245794,1246314..1246928)
AA seq 317 aa
MKLAGLKSIENAHDESVWAATWVPATASRSALLLTGSLDETVKLWKPDDLILQRTNTGHC
LGVASVAAHPSGMIAASSSLDSFIRVFDVDTNNTIATLEAPPSEVWQLRFDPKGTILAVA
GGGSASVKLWDTATWNLVATLSIPRPEGPKPSDKTSSKKFVLSVAWSPDGRRIACGSMDG
TITVFDVARAKFLHHLEGHYMPVRSLVYSPAEPRLLFSASDDTHVHMYDAEGKTLIGAMS
GHASWVLSVDVSPDGAAIATGSSDRTVRLWDLSMRAAVQTMSNHTDQVWGVTFLSGGGAC
RLASVSDDKSISLYDYS
NT seq 954 nt   +upstreamnt  +downstreamnt
atgaaacttgcggggctaaaatccatcgaaaacgcccacgacgagtcggtgtgggcggcc
acatgggtcccggcgacggcgtccagatcggcgctgttgctgacaggttcgctggacgag
acggtgaagctatggaaaccggacgacctcatccttcagcgcaccaacaccggccactgc
cttggcgtggcgtctgtggcagctcacccttccggcatgatcgccgcctcgtcctccctc
gacagcttcattcgggtcttcgacgttgacactaacaacaccattgctactctcgaagcc
ccaccttccgaggtctggcaattgcgtttcgatcccaagggtacgattcttgctgttgca
ggcgggggcagtgcctctgtgaagctttgggacacagcaacatggaatctggttgctaca
ctgtcaattcctcgtccagaaggaccaaagccctccgataaaaccagcagcaagaaattt
gtcctgtcagttgcctggagtccagacggtagacgcattgcttgtggctccatggatgga
accattactgttttcgatgtagcccgtgccaagtttctacaccatctggaaggtcattac
atgcctgttcggtctctggtttattcgcctgctgaaccaaggttactcttttcggcttcc
gacgatacccatgttcacatgtatgatgctgaggggaaaaccctgattggggctatgtct
ggtcatgcgagctgggtattgagcgtggatgttagcccagatggggctgctatcgccaca
ggctcgagtgaccgaaccgtgcggctctgggatctcagcatgagggccgctgtgcagaca
atgagcaaccacacagaccaagtatggggagtgacttttctatcaggaggaggggcctgt
cgacttgctagtgtttcagatgacaagagcatatcgctctatgactactcttga

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