KEGG   Ziziphus jujuba (Chinese jujube): 107424327
Entry
107424327         CDS       T04794                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03020  RNA polymerase
zju03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107424327
  09124 Replication and repair
   03420 Nucleotide excision repair
    107424327
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107424327
   03400 DNA repair and recombination proteins [BR:zju03400]
    107424327
Enzymes [BR:zju01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107424327
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     107424327
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107424327
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 107424327
NCBI-ProteinID: XP_060669594
UniProt: A0A6P4A7L8
LinkDB
Position
1:join(22804768..22805010,22805730..22805951,22806061..22806351,22806440..22806637,22806788..22806852,22806951..22807037,22807120..22807240,22807431..22807475,22807564..22807701,22807863..22807935,22808119..22808195,22808281..22808388,22808579..22808695,22809679..22809834,22809943..22810047,22810144..22810269,22810350..22810427,22810516..22810611,22810694..22810809,22810887..22810956,22811038..22811091,22811175..22811321,22811546..22811845,22812591..22813013,22813127..22813246)
AA seq 1191 aa
MEVDEEYDLQRNDGDEEEISQEDAWAVISAYFEVHGLVRQQIDSFDEFIHNTLQEVVDEF
ANLEIRPNPDPNPVGKQDFPETIYKIHFGQTYLSKPTMTESDGETATLFPKTARLRNLTY
SAPLYMDVTNTVIKKGHDGEEVTETQNFPKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE
CLYDQGGYFIVNGNEKLLIAQERMSTNHVYVFKKKQPNKYAYVAEVRSMAKSQNIPPSTM
FVRMLSRTSAKGGSSGQYIRVTLPYIRAEIPIIIVFRALGFVADKDILEHICYDFFDTQM
MELLGPSLEEAFVIQNQQVALDYIGKRGAKVGKTKNERIMYAKEKLEKEMLPHVGVGEIW
KRKKAYYFGYIVHQLLLCALGRRAEDDMDHYGKKRLDLAGPLLRGLFRMLFRKLTKDMRG
YVHKCVDKGKDVNMLFAIKAKTITSGLKYSLATGNWGQANAASTRTGVSQVLNRLTYAST
LSHLRRINSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVCITVGSDA
YPILEFLEEWGTESLEEISPAVIPQSTKIFVNGCWVGIHRDADMLVKALWRLRRRVDVNA
EVGVVRDIRLKELRIYTDGGRCSRPLFIVEKQRLLIKKKDIHALQQRESLEDGGWHDLVS
KGFIEYIDTEEEETTMISMTINDLVQARLNKEETYSDTYTHCEIHPSLILGVCASIIPFP
DHNQSQRNTYQSAMGKQAMGIYVTNYQFRMDTMAYVLYYPQKPLVTTRAMEHLHFRQLPA
GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFHSYRDEEKKMGTLVNDEFGRPQR
ANTMGMRHGSYDKLDDDGLAPPGTSVSGADIIIGKTTPIAQDEAQGQAASRYTRRDHSIS
LRHGEAGIVDQVLLTTNADGLRFVKVRVRSARIPQIGDKFSSRHGQKGTVGMTYTQEDLP
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAYMGKEGDATPFTDVTVDNVSKALH
KCGYQMRGIETMYNGHTGQRLTAMIFLGPTYYQRLKHMVDDKVHSRGRGPVQILTRQPTE
GRSRNGGLRFGEMERDCMIAHGAACFLKERLFDLSDAFMVHVCGRCGLTAIANLKKNSFE
CRGCKNKTDIVQVPIPYACKLLFQELMAMAIAPRMLTKEVNPVQNQKKNGA
NT seq 3576 nt   +upstreamnt  +downstreamnt
atggaggtcgacgaggaatacgacctgcaacgcaacgatggcgacgaagaggagatctct
caggaagacgcgtgggccgtaatctccgcttacttcgaagtgcatggcttggttcgtcag
cagatcgattccttcgacgagttcatccataataccttgcaggaagtagtcgacgagttt
gctaacctcgagattcgtcccaatcctgaccctaatcccgttggcaagcaggattttcca
gagactatctataagattcactttggccagacttacttaagtaagcccacgatgaccgag
tctgatggagaaacagcaaccttgtttcccaagacagcaaggttaaggaatttaacatac
tcagcccctttatacatggatgtcacaaatacagttataaagaaaggacatgatggtgaa
gaagtcactgagactcagaatttccccaaagttttcataggaaaggttcctataatgctt
cggtctagttattgcacattgtatcaaaattcagagaaggatttaactgagcttggggag
tgtctgtatgatcaaggtggctatttcattgttaatggaaatgagaagcttctaattgct
caagagaggatgagcaccaatcatgtatatgtgtttaagaagaagcagccaaataagtat
gcctatgtggcggaagttcggtctatggctaagtcccaaaacataccgccaagtaccatg
tttgtgcggatgctttcacggactagcgctaaagggggctcttctgggcagtatatccgt
gttactcttccatacattcgagctgaaattcctattattattgtgttccgggctctgggg
tttgttgctgataaagatatacttgagcatatatgttacgacttttttgatactcaaatg
atggagttgcttgggccttcgttagaagaagcatttgttattcaaaaccaacaggtagca
ttagactatattggaaaaagaggagcaaaagtgggtaaaactaagaatgagagaattatg
tatgcaaaagagaaacttgaaaaggaaatgcttcctcatgttggtgttggagaaatttgg
aagagaaaaaaagcatactattttggatacattgttcaccagcttctactatgtgcactt
ggtcggagggcagaagatgatatggatcattatggcaaaaaaaggctggaccttgctgga
ccactactcaggggcttatttagaatgctgttcagaaaattaactaaggacatgagaggt
tacgtgcacaagtgcgttgacaaaggaaaggatgttaacatgctatttgccatcaaagca
aaaaccattaccagtggtcttaaatattcactcgctactggaaactgggggcaagcaaat
gcagccagcacaagaactggagtgtcacaggtgctaaaccgtttgacatatgcctccacc
ttgtcacacttgcgaaggataaattctccaatagggcgtgaaggaaaattggctaaacca
cgacaattgcacaattcacaatggggaatgatgtgtccagctgaaacacctgaaggacaa
gcgtgcggactggttaagaatcttgccttgatggtgtgtataacagtagggtcagatgca
tatccaatcctggaatttttagaagaatggggtacagaaagccttgaggaaatttcccct
gcagttattccccaatccacaaaaatctttgttaatggttgctgggttggtatacatcgt
gatgctgatatgttggtgaaagcattatggcgtctgaggagacgggttgatgttaatgct
gaagttggggttgttagagatattcgtttgaaagaattgcgaatatatactgatggtggc
cgttgcagccgtccattattcatcgtggagaaacagaggcttctcataaagaagaaggat
attcatgcactgcagcagagggagagccttgaagatggtggttggcatgatcttgtatct
aagggattcatagaatatattgacactgaagaagaggagacgactatgatttcaatgacc
attaatgatcttgtacaagcaaggcttaataaagaggagacatattctgacacttatact
cattgtgaaatccacccatcactaattcttggtgtctgtgcttcaattataccatttcct
gatcataatcaatcccaaagaaatacgtatcaatcggctatgggaaagcaagccatggga
atttatgtaaccaactatcagtttcgaatggatacaatggcctacgtcttgtactaccct
caaaagccacttgttacaactcgtgccatggagcacctccattttaggcaacttccagca
ggcattaatgccattgttgcaattgcctgctattctggctataaccaagaagattctgtc
atcatgaaccaatcatctatagatcgtggatttttccggtctcttttcttccactcttac
agggacgaggagaaaaaaatggggaccttagtcaacgatgaatttggtcgtccgcagaga
gcaaataccatgggtatgcgacatggttcttatgataaattagatgatgatggtcttgca
cctcctggcactagtgtttcaggcgcggatattatcatcggaaagacgactcctattgct
caggatgaagcccaggggcaagctgcttcacgttacacaaggcgtgaccatagcataagt
ttacgacacggtgaagcagggattgtggatcaagttctactgacaacgaatgctgatggg
ttaaggtttgtgaaagtgagagtgagatctgctcgaatacctcagattggtgataagttt
agtagtcgacatggtcagaaggggacagtgggcatgacttatacacaagaagacttgcca
tggactgtggaaggaatcacccctgatattattgtgaatccacatgctattccttctcga
atgacaattggtcagcttattgaatgtatcatggggaaggtcgctgcgtatatgggaaag
gaaggagatgctactccgtttacagacgtaactgttgataatgtaagcaaagctcttcac
aaatgtgggtatcaaatgcgagggattgaaaccatgtataatggtcatactggccagcgg
cttaccgctatgatattccttgggccaacttattaccaaagattgaagcacatggtagat
gataaggtccattcccgtgggcgtggtcctgtgcagatcttgacgaggcaacctactgag
ggacgatctcgcaatggaggtctccgtttcggagaaatggaacgtgactgcatgattgct
catggtgctgcttgctttctcaaagagagattgtttgacctaagtgatgcatttatggtt
catgtttgtgggcgttgtgggttgacagctattgcaaatctgaagaagaattcttttgag
tgcagaggttgcaagaacaaaactgacattgttcaggttcccattccttatgcgtgtaag
ctactattccaagaacttatggccatggccatagcaccaaggatgctcacaaaggaagtc
aatccagtacaaaatcagaagaagaatggagcctga

DBGET integrated database retrieval system