KEGG T04794: 107424672

Ziziphus jujuba (Chinese jujube): 107424672

Entry

107424672         CDS       T04794

Name

(RefSeq) uncharacterized protein LOC107424672

K10756

replication factor C subunit 3/5

Organism

zju Ziziphus jujuba (Chinese jujube)

Pathway

zju03030

DNA replication

zju03410

Base excision repair

zju03420

Nucleotide excision repair

zju03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:zju00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107424672
   03410 Base excision repair
    107424672
   03420 Nucleotide excision repair
    107424672
   03430 Mismatch repair
    107424672
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zju03032]
    107424672
   03036 Chromosome and associated proteins [BR:zju03036]
    107424672
   03400 DNA repair and recombination proteins [BR:zju03400]
    107424672
DNA replication proteins [BR:zju03032]
Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    107424672
  DNA Replication Termination Factors
   ELG1-RFC complex
    107424672
Chromosome and associated proteins [BR:zju03036]
Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    107424672
DNA repair and recombination proteins [BR:zju03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     107424672
  Check point factors
   HRAD17(Rad24)-RFC complex
    107424672

SSDB

Motif

Pfam:

RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA_16 TIP49 AAA_5 DUF815 AAA_2 Rad17 nSTAND3 Glutaminase

Other DBs

NCBI-GeneID:

107424672

NCBI-ProteinID:

XP_015890007

UniProt:

A0A6P4A477

LinkDB

Position

7:complement(join(10162059..10162120,10162211..10162256,10162329..10162403,10162485..10162554,10162699..10162794,10162878..10163014,10163140..10163321,10163407..10163584,10163870..10163902,10164008..10164118,10164321..10165694))

AA seq 787 aa
MERSPRHGRTSNPYSSTLSKNRRSGYEPSDTETDFQESPWHDHGRKNEDTLVSEGPRLME
FDLQRKTDSLNRSRRHSSRFELDISSSRKNDIESPARRRYNSKSPYKPSRDDNDEVHSPL
PLTPPSEFIGNVSPLSKSVGTRFRSPHKPGREGNDLDEDEIVIPTRKQNQRPPAMDDNEE
QLQLVEVARWTKKPNYSRRSVTAPRQRLRNYQEIQHKVEAKPAPLSKAVIQKQVEPAPYA
KKPSIGEINEMVANAKLSRIPACNSPIFESTDSFATGDIFFSREGSVVALPKNVLAKNGG
LESLYVPKPNIISERDSASHLRSREASNFEQNARVTSSSIGLSQTTTTSSSAISRQSSGG
LSFGSGRMSNGSARTTESMRKFTDNRIKSQSDAWFACMWKGPCSRSKSPKRQAFDEAAYI
QKAYVVEHLNQFWADKHQPGSLNGFTCHKQEAQLLRQLVSEDTCPHILLKGPTGSGKRSL
AMALLREIYGDACRNISYDLRYFQVQEQRPTEVVVPIASSAYHLELNVHLEQNAIYALLG
LVREISKDYEITPEISDANFKANYKVIVLYGVDKAAENIQHLIKWILDCYTDACKLVLCC
EDDSNIIESVKNRCKVIKIDAPVTHEIMEVLTQIARKEDFDLPMSFAAKIATKSKQNLRK
AIMALETCKAHNYPFMDDQPIQLGWEEVLAEVAAEILSDPSPKRLLLIRGRFQKLLSDFV
HPKLILQKLVELFLRGIDCSIKRELYYWHAYYDKRLPAGTSALLKLEEFMVKFMSIYRKR
CNHRHYM

NT seq 2364 nt +upstreamnt +downstreamnt
atggagaggtcaccacggcatggaagaacctctaatccttattcttcgacgttgtcgaag
aacagacgaagtggttacgaaccgtctgatacagagacggatttccaagaaagtccatgg
catgatcatggtcgaaagaacgaagatactttggtttccgaagggccaagattaatggag
tttgatttgcagagaaaaaccgactctttgaaccgtagccggaggcattcgtccaggttt
gaactcgatatctcttcttctagaaagaacgatatagaaagccctgctcgtaggaggtac
aacagcaagtcaccgtataagcctagtagagatgataatgatgaagttcattccccttta
cctcttacacctccatctgaatttattggaaatgttagtcctttgtcaaaatctgttgga
acgagatttcgttcacctcataaacctggtagagaaggaaatgatttggatgaggatgag
attgtaattccaactagaaagcagaaccagagaccgcctgctatggatgataacgaagaa
cagctacagcttgttgaggtcgctagatggaccaagaaaccaaactatagtcggagatca
gtgactgccccaagacaaaggctaagaaattatcaggaaattcagcataaagtggaggca
aaaccagcaccattgtcgaaagccgtgattcagaaacaagtagaacctgctccatatgca
aaaaaaccttccatcggcgaaattaacgaaatggttgcgaatgcaaagctttctagaatt
cctgcttgtaactctccgattttcgaaagtacagattcctttgcaacaggtgacatcttc
ttttctcgtgaaggttcagttgtggcattgccaaagaatgttttagcgaagaatggtggt
cttgaaagtctttatgttccaaaacccaacataatttctgaaagagattctgcatctcat
ttgagaagtcgagaagcgagcaatttcgaacagaatgctcgagtgacttcatccagtatt
ggtttatcgcaaacgactacgacctccagctctgctataagtaggcagagcagtggtgga
cttagctttggtagtggtaggatgagtaatggaagtgcaaggacaactgagagcatgaga
aaattcacagataatagaataaaaagtcaatcagatgcatggtttgcttgtatgtggaaa
ggaccttgtagcagatcaaaatcacctaaacgtcaagcatttgatgaggctgcttatatt
cagaaggcctatgttgttgaacatctcaatcagttctgggctgataagcatcaacctggt
tccttgaatggattcacttgccataagcaagaagctcaacttctcaggcaactggtatcc
gaagacacctgtccccacattttgctcaaaggacctactggttccgggaaaagatccctg
gcaatggcacttctacgagaaatatatggtgatgcatgtcggaatatatcttatgacttg
agatattttcaggttcaggaacaaagaccaacagaagtggttgttccaatagcatccagt
gcttatcatttggagctcaatgtacacttggagcaaaatgctatttatgcattattgggt
ttggtcagagaaataagcaaggactatgaaattactcctgagattagcgatgctaatttc
aaggccaattacaaagtaatagtcctgtatggcgtggacaaagcagcagagaacattcaa
catttgataaaatggattctggactgttacacagatgcttgtaaactggtactctgctgc
gaagatgattcaaacataattgaatcagtaaaaaaccgttgcaaagtcattaaaattgat
gctcctgtgactcatgaaatcatggaagttcttactcagatagcaagaaaagaagacttt
gatctccccatgagctttgctgctaagattgctactaaatcgaaacagaacctgagaaaa
gcaatcatggctcttgaaacatgcaaagcacacaactatcctttcatggatgaccaacca
attcaacttggatgggaagaggttctagccgaagttgctgcagaaatcctatccgatcca
tcacccaagaggttgcttttaatccggggaaggtttcaaaagcttctatctgattttgtt
caccccaaactgatcctacagaagctggtggaactgtttctaaggggaattgattgtagt
ataaaaagagaactttactattggcatgcatattatgataaaagactaccagcgggaaca
agcgctttactgaaactagaagaattcatggtcaagttcatgagcatatacaggaaacgt
tgcaatcatcgtcattatatgtag

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