Ziziphus jujuba (Chinese jujube): 107425977
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Entry
107425977 CDS
T04794
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107425977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107425977
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107425977
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
107425977
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
107425977
NCBI-ProteinID:
XP_015891541
UniProt:
A0A6P4ABN2
LinkDB
All DBs
Position
9:complement(join(2702163..2702621,2702712..2702777,2702896..2702961,2703626..2703715,2704162..2704207,2704296..2704397,2704563..2704717))
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AA seq
327 aa
AA seq
DB search
MRGLQLPLNQTQKVRLQRALEKLESLSSKANSNASVTIADSIPVNAEDSLLKGHGTTVLN
DEVLATTCGIIERVNKLVYVRSLRARYKPEVGDTIVGRIIEVAPKRWKVEINSGQDAVLM
LSSMTLPDGIQRRRTAVDELNMRSIFSENDVICAEVRGFQHDGLQLQARSRKFGKLEKGQ
LLTISPYLVKRRKQHFHHLEQYGVDLVVGCNGFIWVGEHIEPTDDIFEGQVHKPEQHTTE
NDEDSSSLEGQEQSYTPLETRQNICRIANAIRILSTLGFNITVDVIVEIVNLSSSLNLDV
HEMLGPEFHVLVAEKEAVQRSLTKKKI
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagagggttacagcttccattgaaccaaacccagaaggttcggctacagagagctctg
gaaaagctagagtctttgtcttcaaaggcaaactctaatgcttctgttacgatcgccgat
tccatccctgttaacgctgaagattccctcctcaagggacatggaaccacagtactcaat
gatgaagttcttgcaaccacttgcggtatcatcgagcgcgttaacaagctggtctatgtc
cgttctttgcgggccagatacaaaccagaggttggggatactatagtggggcgtattatt
gaggttgctcccaagcgttggaaagtagagataaatagtggccaggatgcagtactaatg
ctttcttcaatgaccttacctgatggtatccagaggcgacgaactgctgttgacgaactt
aacatgcgaagcattttttcagagaatgatgtcatctgtgctgaagttcgtggttttcaa
catgatggcttacaacttcaagcaagaagtaggaagtttggaaagcttgaaaagggtcaa
ttactcacaatctcaccttatctagtgaagagacgcaaacagcattttcatcatttagaa
cagtatggagttgacttggttgttggctgtaatggattcatctgggttggtgagcatatt
gaacctacagatgatatatttgagggacaagtccacaagcctgagcagcatacaactgaa
aatgatgaagattcatcaagtctggaagggcaagaacagagttatactcctctagagacg
agacaaaacatatgcagaattgcaaatgctatccggatattgtccactttaggcttcaat
attactgtagacgtgattgtggagatagtgaacttgagcagctctctgaatctagatgtt
catgaaatgcttggtccagaatttcatgttctggttgcagagaaagaggctgtacagcga
agcttgactaaaaagaagatatga
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integrated database retrieval system
