Ziziphus jujuba (Chinese jujube): 107426229
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Entry
107426229 CDS
T04794
Name
(RefSeq) DNA mismatch repair protein PMS1
KO
K10858
DNA mismatch repair protein PMS2
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03430
Mismatch repair
zju03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107426229
03460 Fanconi anemia pathway
107426229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zju03400
]
107426229
DNA repair and recombination proteins [BR:
zju03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
107426229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
107426229
NCBI-ProteinID:
XP_048337185
LinkDB
All DBs
Position
9:complement(join(2073088..2073198,2073378..2073559,2074119..2074222,2074569..2074634,2074884..2074957,2075094..2075162,2075632..2075758,2075850..2076121,2076636..2078060,2078171..2078731))
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AA seq
996 aa
AA seq
DB search
MEAATPSDSPTIIRPINKGVVHRICAGQVILDLSSAVKELVENSLDAGATSIEIALKDYG
KECFQVIDNGSGISPNNFKVLALKHHTSKLGDFPDLQSLTTFGFRGEALSSLCVLGNLTV
ETRTKYESVATHLTYDRTGLLVAEKKTARQIGTTVTVNSLFSSLPVRCKEFTRNIRKEYG
KLISLLNAYALIAKGVRLVCTNKTGKSVKSVVLKTQGSGSLKDNIITLFGMNTFNCLQPL
TLCISDGCEVDGFVSKPGQGNGRNIGDRQFFYVNGRPVDMPKITKLVNELYRSANSQQHP
VAILNFTVPTRACDVNVTPDKRKVFFSDENTILHALREGLQQIYSSSNACYAVNKAEELT
METGRSQLCSPHQKSHVVVKPLSKDESSPEEVQDEDGNLEVQSHVKTVETDVKDTHIIES
VSGDNIMRDFALGVHSINKGEDTSQLMTHNDSIISSQNTISFSKMVKDSYSHSSVVQSSL
DKFVTVNKRKHECISTILSEVPVLRNQTLQFQSKSSNFEDNAAVSRSPSPQQVEDSAKVE
MLSKMPVLRNQTLQFQSENRNDKSKFAVSRFASPCQVDDSADIEMLSEVPVLRKHSLYFQ
SKNSIVENDAKVSRSPCPHRVDDSAEVEESHASKYIREEKISNKIVNALASVCDTDNGEP
PEDIDTHEKGVPVANITSIASSSGDLELLPEDGSVDVPLHSSSIRIDAQKPSSDLKICST
VQFSIQDLKTKRQKMVSQLQSSKYICQRRKTKRCYTAATLELSQPEDEERKAKALVAATT
ELEKLFRKEDFSRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQSTILNVQP
LLRPLRLELSPAEEVVASMHIDIIRKNGFALEEDPDAPPGHQFRLKAVPFSKNITFGVED
VKDLISTLADDHGECTMIGTYKMDTPNSVCPPRVRGMLASRACRSSVMIGDALGRNEMQK
IIGHLAKLNSPWNCPHGRPTMRHLIDLTSIYKRSEE
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagcaactccgtccgattccccaaccataataagaccgataaacaaaggcgtt
gttcacagaatctgcgccggccaagtgattctggacctctcgtcggccgtcaaggagttg
gtcgagaacagcctcgatgccggcgcaaccagcattgaaatcgctctcaaagactacggc
aaggagtgtttccaagtgatcgacaatggctctggcatttcgccgaacaacttcaaggtc
ctcgcgcttaagcaccacacttcgaagctgggcgatttccctgaccttcagtctctgacc
acgtttggttttcgaggtgaggcgctgagctctctctgtgtgttggggaacttgaccgtc
gaaaccaggaccaaatacgagtccgttgccacgcacttgacttatgatcgtacgggattg
ttggtagccgagaagaagacggcccgtcaaattggcaccactgttactgtcaattctttg
ttctccagtttgccagtgcgatgcaaggaattcactcgtaacattcggaaggagtacgga
aagcttatttcgttactaaatgcctatgcccttattgcaaaaggagttcggttagtatgc
acaaacaaaaccggtaaaagtgtaaaatcggtggtacttaaaacgcaaggcagtggttcg
cttaaggacaacatcattactctgtttggcatgaacactttcaactgcttgcaacctctg
actttatgcatatcagatggttgtgaggttgatggtttcgtgtccaagcctggacaaggt
aatggacgcaatattggggatagacaattcttttatgtgaatggtcgaccggtggacatg
cctaaaatcaccaagcttgtgaatgagttgtacagaagtgcaaactcccagcaacatcct
gttgcaatattgaattttactgttccaaccagagcatgtgatgttaatgtaactcctgat
aaaaggaaagtgttcttttccgacgaaaacaccatattacatgcactaagagagggtttg
cagcagatttattcctcaagtaatgcctgttacgctgttaataaggccgaggagcttact
atggaaacgggtaggtctcagttgtgttctcctcatcagaaatctcatgtagtggtgaaa
ccattatctaaggatgagagttctcctgaagaagttcaggatgaggatggcaatttggag
gttcaaagtcatgtgaaaactgttgaaactgatgttaaggatacccatattatagaaagc
gtttctggtgataatataatgagggactttgctttgggagtgcacagcattaacaagggg
gaggatacaagtcaattgatgacccacaatgacagcatcattagcagtcagaatactatt
tccttctctaaaatggttaaggattcgtacagtcattcaagtgtggttcaatcatcgctt
gataaatttgtaactgtcaacaaaagaaagcatgaatgcatcagtacaatactatctgaa
gtgcctgtcttaagaaatcagactcttcagtttcaatccaagagcagcaattttgaagac
aatgctgcagtttcaagatcccctagccctcagcaagttgaggactctgctaaggttgaa
atgctatctaaaatgcctgtcttaagaaatcaaactcttcaatttcagtctgagaacaga
aacgataaaagcaaatttgcagtttcaagatttgcaagcccttgtcaagttgatgactct
gctgatattgaaatgctatctgaagtgcccgtcttaagaaagcattctctttactttcaa
tccaagaacagcattgttgaaaatgatgctaaagtttcaagatccccatgccctcaccgg
gttgatgactctgctgaggtagaggaaagtcacgcttccaagtatattagagaagaaaag
atctccaataaaattgtgaatgcacttgcttctgtatgcgatactgataatggagaacct
ccagaggatatagacactcatgagaaaggagttcctgttgctaatatcacatcaattgct
tcatccagtggggatctcgaattgctgcctgaagatggttcggttgacgttcctttacat
tcttctagtattcggatagatgcccaaaagccttcttctgaccttaagatatgttccacc
gtgcaatttagtattcaagacctgaagaccaaaaggcagaaaatggtgtctcaattgcaa
tccagcaaatatatatgccaaagaaggaagacgaaaaggtgttatactgctgcaacactg
gagctatctcaacctgaagatgaggagcgaaaggcgaaggctttagttgcagcgactact
gaattggaaaaactttttagaaaagaagacttcagcaggatgaaggtaattggacaattc
aatcttgggttcatcattgggaagttagatcaagatttatttattgtggatcagcatgct
gctgatgagaaatataattttgagcgtctgtcacaatcaaccatcttaaatgtacaacct
ttacttcggccgttaaggttggagttatctcctgcagaagaagtggttgcttcaatgcat
atagatataatcaggaaaaatggatttgctttggaagaagatcctgatgcaccccctggg
caccaatttagactaaaagctgtccccttcagtaaaaacataacttttggagttgaagat
gttaaagatttgatttctactcttgctgatgatcacggggaatgcacaatgatcggtact
tataagatggacacccctaattctgtttgcccacccagagttcgtggcatgctggcgtca
cgcgcatgcagatcatctgtcatgattggggatgcacttggaagaaatgagatgcagaag
ataattgggcatttggcgaagctgaactctccttggaattgtccgcatggaaggccaaca
atgcgccatttaatagacttgacgagcatatacaagagatcggaagaatga
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