KEGG   Ziziphus jujuba (Chinese jujube): 107426599
Entry
107426599         CDS       T04794                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107426599
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107426599
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107426599
   03041 Spliceosome [BR:zju03041]
    107426599
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107426599
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107426599
Spliceosome [BR:zju03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107426599
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 107426599
NCBI-ProteinID: XP_015892311
UniProt: A0A6P4A8N7
LinkDB
Position
9:complement(join(6474933..6474965,6475284..6475356,6477138..6477261,6477357..6477390))
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPESE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaacaatccttcacagctactcccctcagagttgatcgaccgctgcattggttcc
aaaatatgggtaataatgaagggtgacaaggagctcgtcggcactcttaggggattcgat
gtttacgtcaatatggtcctcgaagacgtcactgaatatgagatcactgcagaaggaaga
cggataaccaagcttgaccagattctattgaacggaaacaacattgccattcttgtccct
ggcggttcacctgaatcagagtga

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