Ziziphus jujuba (Chinese jujube): 107426620
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Entry
107426620 CDS
T04794
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03018
RNA degradation
zju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107426620
09123 Folding, sorting and degradation
03018 RNA degradation
107426620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107426620
03041 Spliceosome [BR:
zju03041
]
107426620
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107426620
mRNA degradation factors
5'-3' decay
Lsm complex
107426620
Spliceosome [BR:
zju03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107426620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
107426620
NCBI-ProteinID:
XP_015892332
UniProt:
A0A6P4A8P9
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All DBs
Position
9:complement(join(6458428..6458460,6458780..6458852,6460631..6460754,6460864..6461131))
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AA seq
165 aa
AA seq
DB search
MNVLDLLVIEDTIRGCRCPRSDGCGYGSTKVVDLGYRPREPGDCSKLFSALSSFAALICS
REELHNHRLLPRPEFSASMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVY
VNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPESE
NT seq
498 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtactagacctactagttattgaagataccattcgagggtgccgatgtcccaga
tcagatggttgtggatatggatccaccaaggtggttgatctaggatacagaccaagagaa
ccgggtgattgctccaagctttttagcgcactttcaagtttcgcagctcttatttgcagc
cgagaggagctccataaccatcggcttctaccacggccagagttttctgcatccatggct
aacaatccttcacagctactcccctcagagttgatcgaccgctgcataggttccaaaata
tgggtaataatgaagggtgacaaggagctcgtcggcactcttaggggattcgatgtttac
gtcaacatggtcctcgaagacgtcaccgaatatgagatcactgctgaaggaagacggata
accaagcttgaccagattctattgaacggaaacaacattgccattcttgtccctggcggt
tcacctgaatctgagtga
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