Ziziphus jujuba (Chinese jujube): 107427319
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Entry
107427319 CDS
T04794
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 57 isoform X1
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zju03009
]
107427319
Enzymes [BR:
zju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107427319
Ribosome biogenesis [BR:
zju03009
]
Eukaryotic type
90S particles
Helicases
107427319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
107427319
NCBI-ProteinID:
XP_015893185
UniProt:
A0A6P4B431
LinkDB
All DBs
Position
1:join(30668560..30668640,30668778..30668889,30669002..30669117,30669209..30669300,30669837..30669933,30670114..30670194,30670271..30670503,30670855..30671055,30671143..30671233,30671539..30671661,30672383..30672533,30672979..30673199)
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AA seq
532 aa
AA seq
DB search
MSEDTSFLFSGLHFDRKKFAKDFSRFKEKENSDDLIENLSLVEVEKEEEKKVSTKKRKRN
AAVSEETVEGFTVFKNSKSASVENEQAKKESSQEKKKLNRQLEQDAIFRKKYNIHVSGNN
VPCPLQNFTELSSRYGCRSKLLRNLAELGFKEPTPIQRQAIPVLLSGRDCFACAPTGSGK
TLAFVCPMLMKLKHPSRDGIRAVILCPTRELACQSIRECKKMAKGYKFRIKLMTKELVRQ
NDLSNFFCDVLISTPLRLRLAVRKKKMDLSRVEYLVLDESDKLFELESLMIKQIDSIVKA
CTNPSIILSLFSATLPDYVEEIARTKMHDAVRVIIGRKNTATETVKQKLIFTGSEEGKLI
ALRQSFAESLNPPVLIFLQSKERAKELYAELSVANIRVDVIHSDLSQMQRENAVDDFRAG
KTWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRRGEAITFYTEQDI
PFLRNIANAMAASGCEVPSWALTLPKLRWKEHRPRRDSISTNQENYGETSQR
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagacacttcttttttgttctctggcctgcattttgataggaagaagttcgcc
aaagacttctccagattcaaggagaaggaaaatagtgatgacctgatagagaacttgagc
ttggttgaagtggaaaaagaggaagagaagaaagtgtctacgaagaagaggaagcgaaac
gcagcggtttctgaagaaaccgtagagggtttcaccgtctttaagaattcgaaatcagca
tcagtagagaatgagcaagctaaaaaagaatcctctcaggagaaaaagaaacttaatagg
caacttgagcaagatgcaatttttcggaagaagtacaacattcatgtgtctgggaataat
gtcccctgcccacttcagaatttcacagaactaagctctagatatggatgcaggtcaaaa
ttattacgcaatttggcagaacttggatttaaagaaccaacaccaattcaaaggcaggct
ataccagtcctcttatctgggcgagattgctttgcttgtgctccaactgggtctggaaaa
accttggctttcgtttgccctatgcttatgaaacttaagcatccatctagagatggcatc
cgagctgttatcctttgtcctacacgtgaattagcttgtcaatcgatcagagagtgcaaa
aaaatggctaaaggatataaattccgtattaagttgatgactaaagagcttgtaagacag
aatgatttatcaaattttttttgtgatgtacttatatctactccacttcgattaaggttg
gctgtgcggaaaaagaagatggatttaagcagggttgagtatcttgtcttggatgaatct
gataagctatttgagcttgagagcttgatgataaagcagattgattcaatagtaaaagca
tgcacaaatccctcaatcatactctcattgtttagtgctactttacctgattatgttgaa
gagattgcacgtacaaaaatgcatgatgctgttcgagttattattggcaggaagaacact
gctactgaaactgtaaagcaaaagttgatatttactggaagtgaagaagggaaacttata
gcacttcgtcaaagctttgcagagagtctgaatccaccggtgttaatctttctccaaagc
aaggagcgagctaaggaactctatgcagaactatcagttgccaacattagagttgatgtc
atccattctgatttgtctcagatgcagagagaaaatgctgttgatgacttcagagctggc
aaaacatgggttttgattgccactgatgttattgcccggggtatggatttcaaaggtgtc
aactgtgtgattaattatgattttccagattctgctgccgcatacattcacagaattggt
cgatctggcagagcagggaggaggggagaagcaattactttttacacagagcaagatatc
ccatttttgcgaaatattgctaatgcgatggcagcatcaggctgtgaggttccctcttgg
gccttgacattgcccaaactcagatggaaggagcaccggccacgaagagattcaatatca
actaaccaagaaaattatggagaaactagtcagagatag
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