Ziziphus jujuba (Chinese jujube): 107427798
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Entry
107427798 CDS
T04794
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107427798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zju03041
]
107427798
03009 Ribosome biogenesis [BR:
zju03009
]
107427798
Enzymes [BR:
zju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107427798
Spliceosome [BR:
zju03041
]
Complex A
U2 snRNP components
U2 related factors
107427798
Complex B
107427798
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
107427798
Ribosome biogenesis [BR:
zju03009
]
Eukaryotic type
90S particles
Helicases
107427798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_N
AAA_22
AAA_24
Mlp
nSTAND3
DDE_Tnp_1
Motif
Other DBs
NCBI-GeneID:
107427798
NCBI-ProteinID:
XP_015893678
UniProt:
A0A6P4ABA7
LinkDB
All DBs
Position
9:27190405..27191826
Genome browser
AA seq
473 aa
AA seq
DB search
MESSRMKNLAVWQKKEEFLEALRANQTVIVVGDSYSGKTTQIPQFVLEEEAVDLADDDDG
SKGMIACTLPRKLAAISASQCVAEEMGVNIGEEVGYSVPLEEDCISCKTVIKYLTDSMLV
REAMAAASDRLLERYRVIIVDGAHERSLATDILLAFLKQVVLKNRPQPKLVVMGAPTILE
AHGKFENYFQGAPLVKLPQAMLHPVELFYTLELEKDYLEAAIQAVVKMHMSEPAGDILVF
LSKEEEIEKACHEIKREIDNYNNNNDNNRQAQAQDVVGPGAANVLPLYSPDTMLMHHQND
PERKRKIVLSTHTAAEYLLTMIDDGIVYVLDTGFAKRRVYDPWLGHDAILAVPTTQASAD
WRTRCAGRTRPGKCFRLYPERSFHIAFLPHTKPEILESTDLVNTVLTLKKLGIEDLLRFD
FMDRPNPETLMRALERLNHLGALDDHGNLTEVGESMSESTAIIDWLHLLALAP
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggagagcagcaggatgaagaatttggcggtttggcagaagaaggaggagtttttggag
gctttgagagccaatcagacggtaattgttgttggtgatagttatagtggtaaaacaact
cagattcctcaatttgttttagaggaggaggcggttgatcttgccgatgatgatgatggt
agcaaaggcatgattgcatgcacgctgcctcgtaaattggctgcaatctcagcttctcaa
tgcgttgcggaagagatgggtgtaaacattggagaagaggttggttatagtgttcctttg
gaagaagactgcatcagttgcaagactgttataaagtatctaactgatagcatgcttgta
agagaagcaatggcggcggccagtgatcgattgctggaacgctacagagttataattgtt
gatggagctcatgaaagaagtttggccacagatattctacttgcttttctaaaacaagtg
gtgttgaaaaacagaccccaaccgaagctggttgtgatgggtgctcctacaattcttgaa
gcccatggaaagtttgagaattacttccaaggtgcaccactcgtcaagcttcctcaggct
atgcttcatcctgttgaacttttttacacactagaactcgaaaaagattacttggaagcc
gccattcaggcagttgtcaagatgcatatgagtgaaccagcaggagatattcttgttttt
ctctccaaagaggaagagatagaaaaggcatgtcacgaaatcaaaagagaaattgataat
tacaataataataatgataataatcgccaagcccaagcacaagatgttgttggtcctggc
gctgctaatgtacttcctctgtattctccagatacaatgctaatgcaccaccaaaacgat
cctgaaaggaaaaggaaaattgtgttatcaacacatactgcagcggagtatttactgacc
atgattgatgatggaattgtgtatgttttagacactggcttcgcaaaacgtagagtctat
gacccttggcttggccacgatgccatattggcagttcctacaactcaagcaagcgcagac
tggagaacgaggtgtgctgggagaactcgaccgggaaaatgctttaggttgtaccctgag
aggagttttcatattgcttttcttcctcataccaaaccagaaatactggaatccaccgat
ttggtaaatactgtgttaactttgaagaagctggggattgaagatttgctccgttttgat
tttatggatcggccaaatcccgagacattgatgagagcactggagaggttgaatcacttg
ggagcactggatgaccatggcaacttgacagaggtaggggagtctatgagcgagtctaca
gccatcattgattggcttcatttactagcattagctccgtga
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