Ziziphus jujuba (Chinese jujube): 107427801
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Entry
107427801 CDS
T04794
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107427801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zju03041
]
107427801
03009 Ribosome biogenesis [BR:
zju03009
]
107427801
Enzymes [BR:
zju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107427801
Spliceosome [BR:
zju03041
]
Complex A
U2 snRNP components
U2 related factors
107427801
Complex B
107427801
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
107427801
Ribosome biogenesis [BR:
zju03009
]
Eukaryotic type
90S particles
Helicases
107427801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
nSTAND3
SRP54
AAA_7
AAA_30
T2SSE
AAA_24
Flavi_DEAD
AAA_16
TsaE
UvrD-helicase
NACHT
Roc
AAA_11
Motif
Other DBs
NCBI-GeneID:
107427801
NCBI-ProteinID:
XP_048337016
LinkDB
All DBs
Position
9:complement(join(27174432..27174650,27174765..27175003,27175132..27176695))
Genome browser
AA seq
673 aa
AA seq
DB search
MVNESEFRTHSQRYYEILEKRKTLPVWQQKEEFLRVLSANQTVILVGETGSGKTTQIPQF
VLEAFGDNNKGITKKKMIACTQPRRVAAISVSKRVAEEMDVKIGEEVGYTIRFEDCSSSK
TVLKYLTDGMLLREAMADPLLERYRVIILDEAHERTLATDVLFGFLKEVLKNRADLKLVV
MSATLEAEKFQSYFSGSPLINVPGRLHPVEILYLEKPQKDYLESAIQTVLQIHICEPPGD
VLVFLTGEEEIEDACSRIRREIQNLGSQVGPVNVLPLYSTLPPAMQQKIFDPPDEAGGRK
IVVSTNIAETSLTIDGIVYVIDPGFVKQKVYNPRVRLESLLVSPISKASANQRAGRAGRT
RPGKCFRLYTNKSFDELLQPQTYPEILRSNLSNTVLTLKKLGVDDLVHFDFMDPPAPETL
MRALEMLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFGCSNEIVSICAMLSV
PNCFVRPRGAREAADEAKARFAHIDGDHLTLLNVYHAYKNNDEDSSWCYQNFVNHRLMKA
ADSIRQQLVRTMARVQLRLCSNDFSSRDYYINIRKAMLAGNFMQVAHLERSGHYLTVKDN
QMVQLHPSTGLDHKPTWVIYNEYVLTTSKFIRTITGIRGEWLVDLAAHYYDLDNFPECEA
RQALQKLYKKQRQ
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggttaacgaatccgagttcagaacccattcacagaggtactatgagatcctagagaag
aggaagacattgccggtttggcaacagaaagaggagttcttgcgagttctcagtgccaat
cagactgtaattttggtaggcgaaactggcagtggcaaaacaacccagattcctcaattt
gttttggaagcttttggtgacaacaataaagggatcacaaagaagaagatgatcgcatgc
actcagccccgtagagtggctgcaatctcggtctctaaacgtgtagccgaagagatggat
gtgaagattggtgaagaggtcggttacaccattcgtttcgaagattgcagcagttcaaag
actgttctcaagtatctaaccgatggtatgcttttaagagaagcaatggcggatccattg
ttggaacgctacagggttatcattctcgatgaagctcatgaaagaacattggcaaccgat
gttctattcgggtttttgaaagaggtactgaagaacagagccgatcttaagctggttgtg
atgagtgcaacacttgaagctgaaaagtttcagagctacttttctggttcaccactcatc
aacgttcctggtaggcttcatcctgtggaaatattgtacttagagaaaccacaaaaggat
tacttggagtcggcgattcagactgttcttcagattcatatatgtgaacctccgggagat
gttctagtttttctaacaggagaggaagaaatagaagatgcatgctctagaataagaaga
gaaattcagaatcttgggagccaagttggtcctgttaatgtgcttcctctgtattcaact
ctgcctcctgcaatgcagcaaaagatatttgatcctccggatgaagcaggaggaaggaaa
atagtagtatcaacaaatattgcagaaacttcattgacaattgatggaatagtttatgtt
atagatcctggatttgtcaagcaaaaagtttacaacccaagagtacgtcttgaatcgttg
ttggtatctcctatatctaaggcaagcgccaatcagagagctggacgtgctggaagaact
agaccgggaaaatgctttagactgtacactaataagagttttgatgagttacttcagcct
caaacttatccagaaatattgagatccaatctttcaaatacggtgttaactttgaagaag
cttggggttgatgatttggtccattttgattttatggatccaccagctcctgagacattg
atgagagcattggagatgttgaattacttgggtgcattggatgatgatggaaacttgaca
aagcttggggagattatgagtgagtttcctttggatcctcagatgtcaaagatgcttgtg
gtcagtcctgaatttggctgttcgaacgaaattgtttcaatttgtgctatgctttcggta
cccaattgctttgtgaggccaaggggagctagagaagctgctgatgaagcaaaagctaga
tttgcacacattgatggagatcatctgacgttgctaaatgtctatcatgcttacaagaat
aatgatgaagattcttcttggtgctaccaaaattttgtcaatcataggctcatgaaagct
gctgacagtatcagacagcaattggtccgcaccatggcaagggttcaactcaggttatgt
agtaatgactttagcagccgggactactacatcaacatcagaaaggccatgcttgctgga
aatttcatgcaggttgctcatcttgaacgatcaggacactacttgacagtgaaagacaac
cagatggtgcagttacatccttcaacaggtttagatcacaagccaacgtgggtgatttac
aatgaatatgtcttaaccaccagcaaattcatccgtacaatcacaggaattcgcggcgag
tggttggttgatctagcagctcattactacgatttggacaactttccagagtgtgaggct
aggcaagctcttcagaagctatacaagaagcaaagacagtga
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