KEGG   Ziziphus jujuba (Chinese jujube): 107428387
Entry
107428387         CDS       T04794                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107428387
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zju03041]
    107428387
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107428387
Spliceosome [BR:zju03041]
 Complex C
  Other components
   Step II factors
    107428387
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N HA2_C AAA_22 DEAD AAA_19 ABC_tran nSTAND3 AAA_16 AAA_30 NPHP3_N Helicase_RecD ATPase_2 T2SSE MMR_HSR1 AAA_29 SRP54 DAP3 Cas3-like_C_2 AAA_33 nSTAND1 TsaE G-alpha AAA_23
Other DBs
NCBI-GeneID: 107428387
NCBI-ProteinID: XP_024933867
UniProt: A0A6P6GIF2
LinkDB
Position
12:join(4127113..4127312,4127686..4127778,4127871..4127975,4128127..4128344,4128646..4128698,4128829..4128945,4129035..4129126,4129252..4129338,4130196..4130410,4130505..4130597,4130819..4130942,4131132..4131279,4131631..4131700,4131887..4132047,4132454..4132629,4132731..4132881)
AA seq 700 aa
MANLPIVQFEEKILETVEQHPVVVLIGETGSGKSTQLSQMLHRRGYTKSGIIGVTQPRRV
AAVSVARRVAQELDVPLGEEVGYAIRFEDRTSERTRIKYLTDGVMLRESLANPELNEYSV
IILDEAHERSLNTDILLGLMKRLVKRPASNLKVLITSATLDGDKVSKFFSNCPVMTVPGK
LYPVEILYSKERPKSYLETSLKTALDIHIKEPEGDVLIFMTGQDDIEKLVSKLEEKIRSL
EEGSCMDAIILPLHGSLPPEMQVRVFSPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSTVYHDDFLDVTVPE
IQRSSLAGTVLYLKSLDLADIDILKFDFLDSPSSESLEDALKQLYLIDAIDENGLITKVG
RTMAELPLEPSLSRTLMAANEYGCLSQALTVAAMLSAETTLLPGRSKNTEKKRKHNHVDL
PDGSGWGDHIQLLQIFECWHRTNYDIDWCKDNGLQVRGMKFVKDVRKQLSQIMQKIAKGP
LDVETSRRWEESQHNYLNLRKALCTGYANQLAERMVYHNGYRTLGFKPQVVQVHPSSVLK
PDDDGKLPEYVLYHELIATSRPYLRSVCSVDIKWVTPIIEKVNKLNVIKLSGGINHIEEG
TEGINSNLPKKEVVVAGVPDKPDDRIQAARERFLARKGKK
NT seq 2103 nt   +upstreamnt  +downstreamnt
atggcgaaccttcctattgtccaattcgaagagaaaattttagaaacggtggaacagcat
ccagttgtggttctaatcggagagaccggttcgggaaagagcacgcaactctctcagatg
ctgcaccgaagaggctataccaaatctggaatcatcggcgtcactcagccgcgccgagtt
gccgcagtctccgtcgcaagacgtgttgcacaggagcttgatgttcctcttggtgaggaa
gttggatatgccatcagatttgaagatagaacctcagaaagaacccgcataaaatacctt
actgatggagttatgcttcgtgaaagcctggcgaatccagagcttaatgaatattcggtt
ataatactagatgaagctcatgaaaggagtctaaacacagacatattgctgggattgatg
aaacgcttggttaaacggcctgcctcaaatttaaaagttctcattacttcagctactctt
gatggtgataaagtatcaaaattcttttcaaattgccctgtaatgactgttccagggaag
ttataccctgttgaaatattgtacagcaaggagcgtcccaaaagctatctggagacatct
ttaaaaacagctcttgatatacatattaaggaaccagaaggtgatgtcttaatatttatg
actggacaggatgatatagagaagttggtttcaaaattagaagagaaaatcagaagcctg
gaggaaggatcttgcatggatgccataatccttccccttcatggttctttgccgcctgaa
atgcaggtacgtgtgtttagccctccgccaccaaactgtaggcgaataattgttgccaca
aacattgctgaaacttctctgactgtggatggtgttgtgtatgttattgattctggttat
gttaagcaaaggcagtacaacccatcaactggcatgtactctcttgatgttgttcaaatt
agcaaagtacaagcaaatcaacgtgcaggtcgagcaggaagaacacgtccagggaagtgc
tatcggctatacccttccacagtttaccatgatgatttcctggatgtaacagttcctgaa
atacagcgatcttcccttgctggaactgttctttatttgaaatcattggacctcgctgat
attgatatcctcaaatttgattttcttgattccccttcatctgagtctttagaagatgct
ttgaagcaattatatctcattgatgctatcgatgaaaatggattgatcacaaaagttggg
cgaacaatggctgagcttccgctagaaccttcgctctccaggaccttaatggcagcaaat
gaatatggttgcttatcccaggctttgactgttgctgctatgttgtctgcagaaaccaca
ttgcttcctggtcgaagcaagaatactgagaagaagaggaaacataatcatgtggacctt
cctgatggatctggctggggggatcatatccagttgctacagatctttgaatgctggcat
cgaactaactatgatattgattggtgcaaggataatggcttgcaggttagagggatgaag
tttgtcaaggatgttcggaaacagttatctcagataatgcagaaaatagcaaaagggcca
ttagatgtagagacaagcagaagatgggaagaaagccaacacaattatctcaatttgagg
aaggctttgtgcacagggtatgctaatcagctagctgagagaatggtgtatcacaatggt
tatcgaacattgggctttaaaccccaagtggtacaggtgcacccatccagtgtactgaaa
ccagatgatgatggaaaacttccagagtatgttttgtatcatgagctcattgcaacctca
cgcccatacttgcgatccgtttgttctgttgatattaaatgggtgacacctattatagag
aaggttaataaactaaatgtcatcaaactgagtggagggataaatcatattgaagaggga
actgagggaattaattcaaacttgccaaagaaagaggtcgttgttgctggggttcctgat
aagcctgacgatagaatacaagcagctagggaacgatttcttgctcgtaagggaaagaaa
tga

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