Ziziphus jujuba (Chinese jujube): 107432271
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Entry
107432271 CDS
T04794
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107432271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107432271
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107432271
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107432271
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107432271
NCBI-ProteinID:
XP_015898863
UniProt:
A0A6P4B964
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Position
11:9151956..9152783
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AA seq
275 aa
AA seq
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MLASSDPSPKKPVLVRSVWSENLESEFKLIRSVIDDYPLISMDTEFPGVVVRPVGDLDFR
QPSTHYLVLKANVDRLNLIQIGLTLSDKDGNLPDLGSGNRFIWEFNFRDFDVARDAHAHD
SVELLRRQGIDFERNRELGIDSLLFAELMMSSGLVCNDAVSWITFHSAYDFGYLVKVLTR
RFLPEKLVDFLRLVKVFFGSNVYDVKHLTRFCASLYGGLDRVGEALNVDRVTGKSHQAGS
DSLLTLHAFQKIRHLYFSKDGLEKYAGVLYGLEIS
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcctcctccgatccatcgccgaagaaaccggtcctcgttagatctgtatggtcc
gaaaaccttgaatccgagttcaagttgatccgatccgtcatcgatgattacccgctcata
tccatggacacagagttcccaggcgtcgtggtacgccccgtcggagatctggacttccgg
cagccctccacccactatctcgtcctcaaggcgaacgtagatcgcctgaatctgatccag
atcgggctaacgctctctgacaaagatggaaatcttccggatctcggttccggcaaccgg
tttatatgggaattcaattttagggatttcgatgtggctcgcgacgcccatgcgcacgac
tcggtcgagttgctgaggcggcaggggatcgatttcgagaggaacagagagttggggatc
gactcgctcctgttcgccgagttgatgatgtcctcgggccttgtctgcaacgacgctgtc
agttggattacatttcacagcgcttacgatttcggctacctcgtgaaggtgttgactcgg
cggtttttgccggaaaagttggttgattttctgaggctggttaaggtgttcttcggttcc
aatgtttacgatgtgaagcacctgactaggttctgtgcgagcctgtacggagggttggac
cgggtcggcgaggctctaaacgttgatagggtcactgggaagagccatcaggctgggtct
gatagcttgcttactttgcatgcttttcagaagattcggcatctgtacttcagcaaagat
gggctggagaagtatgccggcgttttatatggtttagaaatttcttaa
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