Ziziphus jujuba (Chinese jujube): 107433321
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Entry
107433321 CDS
T04794
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107433321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zju03041
]
107433321
03009 Ribosome biogenesis [BR:
zju03009
]
107433321
Enzymes [BR:
zju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107433321
Spliceosome [BR:
zju03041
]
Complex A
U1 snRNP components
U1 related factors
107433321
Complex B
107433321
Ribosome biogenesis [BR:
zju03009
]
Eukaryotic type
Pre-60S particles
Helicases
107433321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
107433321
NCBI-ProteinID:
XP_015900083
UniProt:
A0A6P4AW70
LinkDB
All DBs
Position
11:complement(join(28182297..28183335,28183513..28183790,28184347..28184697,28184808..28185077,28185615..28185683,28185899..28186123,28186387..28187577))
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AA seq
1140 aa
AA seq
DB search
MATAEPAPSSLGPRYAPDDPTLPKPWKGLIDGSTGVLYYWNPETNVTQYEKPPTLPPPLP
PGPPPAVSTPKLAPIPVAQHGQQIAQTSQQQQAQQVSQHGHLIPQQQSPLVAPVTHQQGS
HMPHAGQQQNPQLAQAMQQQHGQVALTQQQLMQHPGQQMPHMIQQLPQQSGQHALQQPGQ
QLPQQAIHQMPHQIGQQAPQSQGAQMTQPQAQQFTHQQLQYMAYQLSMLPQGQQSSQQQT
QHSAQGQTFANQQEYKSAFPKREEDDFQNRNQIGFSPSHFQQAGVSAVQNLAAGTNSAQM
SQISVHSGQTQQFGGPLRNMQQPSSMGQMQPTGSDLHHPQGPRFQNERDLSAMHNQQSNM
PPVGLRIGQDNNLHNRSGNEYYQQPKLAAIPMARSQQDMQISGIPYPSAASGHANAMNSG
AGHTMHNMYNHGTAGPQFTNNAMTKPPYIGATDVTTLSPAEVYRQQNEVTATGDNVPAPF
VTFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF
ILLRQRHNNPQNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKGPQLKEL
DRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQ
TLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVLQMEKQRRLEQIL
RAQERGSKVIIFCSTKRLCDQLTRSIGCNFGAAAIHGDKSQGERDWVLNQFRSGKSPVLV
ATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAADL
IKVLEGANQCVPPEVREIAMRGGPGFGKDRGAMNRFDSGSGGGRWDSGGRGGMRDAGFGG
RGGMRDGNFGSRSGSRDIGFGGRGGPRDGAISSYGGRGDFFSGRGNRGRGFGGPGGGHGG
WGRNERPLHDRYNNMDVRGGRGRGRGRFDNRRDMGGRNSRGRSYSRSPERVRTWGYSRSQ
SRSWSRSRSRSRSRSHSRRRSWTRSRSRSRSRSWSRGRSRSPSRSRSRSHSNDRCRRQQE
RSLDQNDSTNPEVEAPESGLSPMSPGTQGNAFPAEVVGHVPVVENSEAGSENPGQQSTTE
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggcggagccagcaccttcatcccttggtccccgatatgcacctgatgatccc
actctcccaaaaccctggaagggtttgattgatggaagcacgggtgtgttatactactgg
aatccagaaactaatgtcactcagtatgaaaaaccgcctactttgcctccaccattgcct
cctgggccaccccccgctgtttctacgccgaagcttgctccaattcctgtggctcagcat
gggcagcaaattgcccaaacttcacaacaacagcaggctcagcaagtgagtcagcatgga
catctaataccacaacagcagagtccccttgtggcacctgttactcaccagcagggttca
catatgcctcatgctgggcaacaacagaatccacaattggctcaggccatgcaacagcag
catggacaggtggcattaacgcagcagcaattgatgcagcatccaggtcagcaaatgccg
catatgattcaacaattaccccagcaatcaggccagcatgctttgcagcagccaggacag
caattgccccagcaagccatccatcaaatgccccaccaaattgggcaacaagcaccacag
agtcaaggtgcccaaatgacgcaaccacaagcacaacaatttacacatcagcagctccag
tatatggcttatcagctgagcatgcttcctcaaggacaacaaagttcacagcaacagact
cagcatagtgcacaagggcaaacatttgcaaatcaacaagagtataaatcagcgttccct
aagagggaagaagatgattttcagaacagaaatcaaattggattttcaccttcccacttc
caacaagctggcgtctcagctgttcagaaccttgctgctggaaccaattcagctcagatg
tctcagatcagtgttcattcaggtcaaacccagcagtttggtggccctttacgcaatatg
caacagccttcctccatgggtcaaatgcagccaactggttctgatttgcaccatccacag
ggtcctaggttccaaaatgagagggatctatcagcgatgcacaaccagcagtctaacatg
ccacctgttggattaaggataggacaggataataatttgcataaccgaagtggaaatgaa
tattatcagcagcccaagcttgctgccattccaatggcaagaagtcagcaggatatgcaa
ataagtggaattccatatcctagtgcagcatctggtcatgccaatgcaatgaatagtggt
gcgggccataccatgcataacatgtacaatcatggaacagctggtccacaattcacaaat
aatgctatgacgaagcctccttatattggagctactgatgttactactctctcacctgct
gaagtttatcgtcagcagaatgaagtgactgcaacgggtgacaatgttcctgcaccattt
gtgacatttgaggccactggttttcctccagagatactgagagagatttattctgctggc
ttctcgtctcccacaccaattcaggcacagacatggccaattgctcttcaaagtagggac
attgttgcaattgctaaaactggttctggaaaaacgttgggctatttgatccctgccttt
attcttcttagacaacggcacaataatcctcagaatggcccaacagtgttggttttagct
ccaacccgcgagcttgccacacaaatacaagatgaggtcatcaaatttggccgatcatca
agggtctcttgcacgtgcctgtatggtggagctcctaagggtcctcagctaaaagaatta
gaccgtggagcagatatagttgttgcaactccaggtcggcttaatgacatactagaaatg
aagaagattgactttgggcaagtttcacttcttgtgcttgatgaggcagatcgaatgctt
gatatgggttttgaaccccaaatccgtaagattgtgaatgaaatacctccacgcagacaa
actctcatgtatactgcaacctggcccaaagaagtaagaaagatagcaggtgatcttctt
gttaatcctgtccaagtgaacattggcagtgtcgatgagcttgctgcaaacaaggctatc
acacagtatgttgaagttgtcctgcaaatggaaaagcagaggcgcttggagcagatcctt
agagcacaggagcggggttctaaggtcatcattttttgttccactaagagattgtgcgat
cagcttacacgtagtattggttgtaattttggtgctgctgctattcatggagacaaatct
caaggtgagagagactgggttttaaatcagttccgaagtggaaagtccccagtattagtc
gcgactgatgttgctgcccgtgggcttgacatcaaggacataagggtcgtgattaactat
gatttccctactggggttgaggactatgttcacagaattgggagaactgggagggctggt
gcaactggagtatcttataccttcttctccgagcaggattggaaatatgcagctgattta
ataaaagttctggaaggagcaaaccagtgtgtgcccccagaggtgcgtgagattgctatg
cgtggtgggcctggttttggcaaagataggggtgcgatgaatcgttttgattctggtagt
ggtggtggtcgttgggattctggcggtcgcggtggcatgagggatgctgggtttggaggc
cgtggtggtatgagggatggcaattttggtagtcgcagtggctcgagggacattggtttt
ggtggtcgtggtggtcctagagatggtgccataagcagctatggtgggaggggagatttc
ttttctgggcgtggtaacaggggacgtggatttggtggccctgggggtggtcatgggggt
tggggtagaaatgaacgtcccctgcatgataggtacaataacatggatgtacgcggagga
cgtgggcgtggacggggtcgatttgataatagaagggacatgggtggtaggaacagcaga
ggcagaagctatagccgtagccctgaaagagttagaacgtggggttatagcagaagccaa
agtcgaagttggagccgcagccgcagccgcagccgtagccgcagccactccagaaggagg
agctggactaggagccggagtaggagtcgtagtcggagctggtctcgtggtcgtagtcgc
agtccaagccgcagccgcagtcgcagccacagtaatgacagatgcaggaggcaacaggag
cgcagcttggatcaaaatgattctacaaacccagaagtcgaagctcctgagtcggggttg
tcgcccatgtccccaggtacacaaggcaatgcatttccagctgaagttgtgggacatgta
ccagtagttgagaattctgaggcaggctcagagaacccgggccagcaatcaactaccgaa
tag
DBGET
integrated database retrieval system
