KEGG   Ziziphus jujuba (Chinese jujube): 107433645
Entry
107433645         CDS       T04794                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107433645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107433645
   03012 Translation factors [BR:zju03012]
    107433645
Enzymes [BR:zju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107433645
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     107433645
Translation factors [BR:zju03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    107433645
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C DEAD HA2_N AAA_22 nSTAND3 ATPase AAA_19 T2SSE AAA_16 AAA_23
Other DBs
NCBI-GeneID: 107433645
NCBI-ProteinID: XP_015900440
UniProt: A0A6P4BCR8
LinkDB
Position
11:complement(join(9464955..9465086,9465222..9465590,9465858..9466044,9466130..9466322,9466403..9466676,9466809..9466968,9467201..9467415,9467640..9467732,9468058..9468213,9468317..9468520,9468909..9469184,9469468..9469563,9469692..9469910,9470015..9470114,9470247..9470392,9470766..9471050))
AA seq 1034 aa
MMSVRLLATDFCSSLPKHLVLFPSRLSSFKRQISTSVMSYRPNYRGGRGVGGSGRPGGRG
GGGRRGGGPGGRGGGGQRWWDPAWRAERLRQMAAEVEPFDENEWWVKMEQMKRGGEQEIV
IKRNFSRSDQQTLSHMARQLELYFHAYNKGKTLVVSKVPLPDYRADLDDLHGSTQKEIRM
SAETETRIGNLLNSSQSQGVSSNDASGASGQGVKQLSADKNITKLVTTLEIDSTKEKLNI
ELKEKQEKMKTSDSLKAMRLFREKLPANKMKLEFLRAVAENQVVVVSGETGCGKTTQLPQ
FILEEEISSLRGADCNIICTQPRRISAISVAARISSERGESLGETVGYQIRLESKRSAQT
RLLFCTTGVLLRQLVEDPKLSGVSHLLVDEIHERGMNEDFLLIIIRDLLPHRPDLRIILM
SATINADLFSKYFGNAPTIHIPGLAFPVTEFFLEDVLEKTWYSIKSEFENFNGSSGRRRR
QQDSKKDPLTLSFEDIDIDSHYRTYSMATRKSLEAWSGSLLDLGLVESTIEYICRHESDG
AILVFLTGWDDISKLLDKFKVNRFLGDSSKFLVLPLHGSMPTIDQREIFDRPPPNKRKIV
LATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GVCYRLYPKLIHDGMLQYQLPEILRTPLQELCLHIKSLQLGSVGSFLAKALQPPDSVAVQ
NAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHR
DPFVLPINRKEDADAAKRSFASDSCSDHIALLKAFEGWKDAKRNGQDRSFCWDNFLSPVT
LQMMDDMRMQFLDLLSDIGFVDKSMGASAYNQYSHDLEMVCAILCAGLYPNVVQCKKRGK
RTAFFTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIFIRDSTNISDYALLLFGG
NLIPSKTGEGIEMLGGYLHFSAPKTTIELIRKLRGELDRLFKKKIEEPRLDISKEGKGVV
AAVVELLHSQHVHY
NT seq 3105 nt   +upstreamnt  +downstreamnt
atgatgtcagtgcgcttgctagccactgacttctgctcgtctcttcccaaacaccttgtt
cttttcccttcgcgactctcttcgtttaagcgtcagatctctacctctgtcatgtcttac
agaccaaactaccgaggtggccgcggcgttggtggtagtggccgtccaggtggtcgcggc
ggaggaggccgtcgtggtggtggtcctggaggtcgcggcggtggtggccagcggtggtgg
gaccctgcttggcgagctgagagattgagacaaatggctgccgaggtggagcctttcgat
gaaaatgaatggtgggttaagatggagcagatgaaaagaggtggagaacaggaaatagta
attaaacgtaattttagtcgctcagaccagcaaaccctatctcacatggctcgtcaactg
gagctttacttccatgcatataacaaagggaagactcttgtggtcagcaaagttccatta
ccagattaccgggctgatcttgatgatcttcatggctctacacagaaagaaattcgaatg
tctgcagaaactgaaactcgaattggaaatcttttgaatagctcacagtcacaaggagta
tcttcgaatgatgcttcaggggcatctggtcagggagttaaacaactttctgctgataaa
aatataacaaaacttgtcaccacgttggagattgattctaccaaggagaaacttaatatt
gaacttaaggagaaacaggaaaaaatgaagacaagtgatagtttaaaggcaatgcggttg
tttcgagaaaaacttcctgcgaacaaaatgaagcttgagtttctgagagctgttgcagaa
aatcaggtagtagtagtttcaggagagacaggttgtggcaagacaacccagctccctcaa
tttattctagaagaggagatatctagtctgcgtggtgccgattgtaacataatatgcaca
caacctcgccgtatatctgctatttctgttgcagctcgtatatcctcagaaagaggagag
agtcttggtgaaactgttggttatcagatccgcttggaatcaaagcgctcagctcaaaca
cgactcctgttttgtaccactggagtattacttcgtcaattggttgaggacccgaaatta
agtggtgtaagccacttgctagttgatgaaatccatgaaagaggcatgaatgaggacttt
ttattaataattatccgtgaccttcttccacatcgtccagatttacgcattattctaatg
agcgctaccattaatgctgacttgttctctaaatactttggaaatgctccaactatacat
ataccgggattggcttttcctgtaacagagttttttctagaagacgttctggagaaaact
tggtatagtatcaagtcagagtttgaaaactttaatgggagttctggaaggagaaggaga
caacaagattctaagaaggatcctttaaccttatcatttgaggacattgatattgattct
cactacagaacttacagcatggctacaagaaagtctcttgaagcttggtctggttcactg
cttgatttgggtctggtagagtcaacaattgaatatatctgtcgccatgaaagtgatggt
gcaattcttgtcttcttaacgggttgggatgacatttctaagctacttgacaaatttaag
gtaaacagatttcttggagactccagcaagttcttggttcttcccctacatggatcaatg
cctaccattgaccaacgtgaaatatttgatcgtccaccccccaacaagagaaaaattgtg
ctggccacaaacattgctgagagtagtattaccatagatgatgttgtctacgtcatagac
tgtggaaaagcaaaggaaactagttacgatgctctcaacaagctggcttgtctcctacca
tcatggatatcaaaggcttcagcacatcagagacgaggtcgtgctggccgtgtgcaacct
ggggtttgttataggttgtatccaaagttgatccacgacgggatgcttcagtatcaatta
cctgaaattcttcgaacacctctgcaagagctatgcctccatattaaaagtttgcagctt
ggaagtgttggatcatttttggccaaggcacttcagcccccagattccgttgctgttcag
aatgcaattgaactgctcaagactattggagctttagatgatatggaggagcttactcca
cttggtcgccacctttgcactctcccattggacccaaacattgggaagatgctactaatg
gggtctatctttcagtgccttaatcctgcgttaacaattgctgctgctcttgctcatcgt
gatccatttgtcctacctataaaccggaaagaggatgctgatgctgccaaaaggtccttt
gccagtgattcttgcagtgatcacatagcacttctcaaagcttttgaaggatggaaggat
gcaaaacgtaatggtcaggatagatcattctgttgggataacttcttatcgccagtaact
ttgcagatgatggacgatatgagaatgcagtttctggatctgttatcggatattggcttt
gtagacaaatctatgggtgctagtgcttacaatcagtacagccatgatttggagatggta
tgtgcaatcctttgtgctggtctctacccaaatgttgtgcagtgcaaaaaaagaggaaag
cggacggcatttttcactaaagaagtagggaaggttgatatacatcctgcgtctgtaaat
gctggggttcatctcttccctctgccatacatggtttatagtgaaaaagtgaagacaacc
agcattttcatccgagactctacaaacatatcagattatgctctacttttgtttggtggt
aatctcatacctagcaaaactggggagggcatagaaatgcttggaggttaccttcatttc
tcagccccgaagacaactatagagttgatacggaaattgcgtggggaacttgataggctt
ttcaagaagaagattgaggaacccagactggacatctctaaggaaggaaagggtgtcgtc
gctgctgttgttgagttattgcacagccaacacgtgcattactaa

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