Ziziphus jujuba (Chinese jujube): 107433851
Help
Entry
107433851 CDS
T04794
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107433851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107433851
03036 Chromosome and associated proteins [BR:
zju03036
]
107433851
Enzymes [BR:
zju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107433851
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107433851
mRNA degradation factors
5'-3' decay
Decapping complex
107433851
Chromosome and associated proteins [BR:
zju03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107433851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
107433851
NCBI-ProteinID:
XP_015900705
UniProt:
A0A6P4AQD4
LinkDB
All DBs
Position
1:join(13835630..13835898,13836930..13836990,13838320..13838554,13838842..13839080,13839317..13839568,13839648..13839828,13840585..13840673,13840753..13840826,13840919..13840997)
Genome browser
AA seq
492 aa
AA seq
DB search
MHNPRGRYPPGIGAGRGGGMNANPAFQSRAPLQQYVQRSVVQNQHYLPQQQHQQYQQQQQ
WLRRGQLGSAADSNVDEVEKTVQFEAADSSSQDWKARLNIPAPDTRFRTEDVTATKGNEF
EDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKI
DQDNNVIQVIILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLL
VGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPANRQILMFSAT
FPVTVKDFKDRYLHRPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSII
FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID
IQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ
IPPHIDQAIYCR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaccctagagggagatatcctcccgggattggtgctgggagaggcgggggcatg
aatgcgaaccctgcatttcagtcaagggcccctctgcagcagtatgtacagaggagtgtg
gttcagaaccagcactatcttccccagcagcaacaccagcaataccagcaacagcagcag
tggctgaggagaggtcagttgggcagtgcagctgattcaaatgtagacgaagttgagaag
acagtacagtttgaagctgcagactcaagttctcaagattggaaagcaaggttaaatata
cccgctcctgatacccgctttagaacagaggatgtgacagcaacaaaaggaaatgagttt
gaggactactttctgaaacgtgaactgcttatgggaatatatgagaagggatttgaaaga
ccatctcctattcaggaggaaagtattcctattgctctaactggtagtgatattcttgca
agagctaaaaatggaactggaaaaacagctgcattttgcattcctgccttggaaaaaatt
gatcaagataacaacgtcatacaagttattatactcgttccaacacgtgagttggctctt
caaacatcacaagtttgtaaggagcttggaaagcatttgaatattcaagttatggttacg
actggaggtaccagtttgaaggatgatataatgcgtttatatcagcctgttcatctactt
gttggaactcctggaagaattttagatcttgcaaaaaagggtgtttgcgtcttaaaagac
tgctcaatgcttgttatggatgaggctgataagcttctgtccccagagtttcaaccatca
attgagcaattgattcagtttttgcctgcaaatcgacaaattttgatgttttctgctaca
tttcctgttacagtaaaggattttaaagatagatatcttcacaggccttacattattaac
cttatggatgagcttactctaaagggtattacacagttctatgcttttgttgaagaaaga
cagaaagttcattgcctgaacactctgttctctaagcttcaaataaatcaatcaattatc
ttctgcaattctgtgaaccgggtagagttactggccaagaaaattacagaacttggctat
tcatgtttttacattcatgcaaagatgcttcaagaccatcgtaacagagtatttcatgac
ttccgcaatggtgcttgccggaatcttgtatgtactgatttgtttacaaggggaatagat
attcaagcggtcaatgttgttattaactttgatttcccaaagaattctgaaacatatctt
catagggttggtcgatctggacggtttggacacctaggtttagctgtgaatttgatcacc
tatgaggatcgttttaacttgtataggattgagcaggaacttggcaccgagataaagcaa
attcccccccatattgatcaggcaatttattgccggtga
DBGET
integrated database retrieval system
