Ziziphus jujuba (Chinese jujube): 107434228
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Entry
107434228 CDS
T04794
Name
(RefSeq) pre-mRNA-processing factor 39-1 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
zju
Ziziphus jujuba (Chinese jujube)
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zju03041
]
107434228
Spliceosome [BR:
zju03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107434228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_12
NRDE-2
TPR_MalT
TPR_10
Cir_Bir_Yir
Motif
Other DBs
NCBI-GeneID:
107434228
NCBI-ProteinID:
XP_015901154
UniProt:
A0A6P4AYP6
LinkDB
All DBs
Position
9:join(5570547..5571027,5571346..5571449,5571568..5571797,5572435..5572602,5573383..5573746,5574241..5574384,5574487..5574639,5574735..5574851,5575085..5575165,5575264..5575413,5575555..5575860,5576088..5576204,5576722..5576835)
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AA seq
842 aa
AA seq
DB search
MGDSEAVVAQTSAVMGYTSTGYTSTGYADVNPNIPHNAGALPSEASGEISTSAAPADVSH
SAPDSSSLGDGNSYTVDSITVMQESHVGSGNEMKTAVAAIDSSGNVAAVENEAINSSQAA
GYGSSVNGVAGAGTVMSVDNGDASDRVGGAVHEQQYVDGSAMSAEEERLWNIVRTNSLDF
NSWTALIEETEKVAENNILKIRKVYDAFLAEFPLCYGYWKKYADHEANLGSVDKVVEVYE
RAIQGVTYSVEIWLHYCMFAISTYGDPDTVRRFFERGLAYVGTDYLSSSLWDKYIEYEYM
QQEWGRLALIYTRILENPNQQLDRYFNSFKELAGNRPLSELKSAEEAAAAAGTSSEAGDQ
VNEGEVQPDAADQSPKPVSAGLTEAEELEKYIGIREEMYKKAKEFDSKIIGFETAIRRPY
FHVRPLNVAELENWHNYLDFMEREGDLNKVVKLYERCLIACANYPEYWIRYVLSMEASGN
LDLANNALARATQVFVKRQPEIHIFSARFKEQSGDIPGARAAYQLVHSEISPGLLEAIIK
HANMEHRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLVSGNAEKAREIIV
EALEHVQLSKPLLEALIHFESIQSLPKQIDYLDSLVVKFIVPNPENPNVASVAEREELSS
IFLEFINLFGGTESIKKAEDRHAKLFLPHRSTSELKKRHADDYLASDKTKIAKSYSSVPS
PAQSLMGAYPSAQTQWSAGYGVQPQAWPPATQAQGQQQWTPGYTQQQAAYSAYGGYGSSY
TNPQLPATTTQTTAYAAYPPTYSAQQTFPPQSYAQPTAATAAAPVPAQQSASAAQAYYGT
YY
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgggggacagtgaagcggttgtcgctcaaacatctgctgtgatggggtatacatcaaca
ggctatacttctactggctatgctgatgtaaaccctaatattcctcataatgctggtgct
ttgccatccgaggccagtggagaaatttctacgtctgctgctcctgctgatgtatctcat
tctgctcctgatagttctagtttaggtgatgggaattcgtatactgtggattctattact
gtaatgcaagaatctcatgttggtagtggaaatgaaatgaagacagctgttgcagctatt
gattcaagtgggaatgttgctgctgttgaaaatgaagccattaactcatcccaagctgct
ggttatggttcttctgtaaatggtgttgctggagcaggaactgttatgtcggttgataat
ggagatgcttctgatcgtgtgggtggagctgttcatgagcaacagtatgtagatggttct
gctatgtctgctgaagaagaaaggctgtggaacattgtgaggactaattctttagatttt
aattcttggactgctttgattgaagagactgagaaagttgctgagaacaacatactgaaa
atccgaaaagtttatgatgcttttttagcagaatttcctttgtgttatgggtactggaag
aagtatgcagatcacgaggctaatctgggctctgttgataaagttgttgaggtttatgag
cgagcaattcaaggggttacttattcggttgagatatggttgcattactgcatgtttgcc
ataagcacatatggagatccagacactgtcagaaggttctttgagcgaggattagcttat
gttggaaccgattacttgtcttcctccctttgggataagtacatagaatatgaatatatg
cagcaggagtggggtcgccttgcattgatttataccaggatacttgagaatccgaatcaa
caactcgatcggtatttcaacagctttaaggagttagctggaaaccggccgctttcagaa
ttaaagtctgctgaggaagctgcagcagcagcgggcacatcttctgaggcaggtgaccaa
gtaaatgagggagaggttcagcctgatgctgctgatcaatcacctaaacctgtaagtgct
ggattaacagaagcagaggagttggagaagtatatcggcattagagaagagatgtataag
aaagctaaagagttcgattctaagatcattggttttgaaacagctataaggaggccgtac
tttcatgtgcgcccccttaacgtagcagagcttgagaattggcataactatctggatttt
atggaaagagaaggtgaccttaataaggtggtgaagttgtatgaaagatgcctaattgct
tgtgcaaattaccctgagtactggatccggtatgttttgtccatggaagccagtggaaat
ttggatcttgccaataatgcactggctcgtgcaacccaagtctttgtcaagagacagccg
gagattcatatcttctctgctcgattcaaagagcagagtggggatataccaggtgctcgt
gctgcgtatcaacttgtccattctgaaatttctcctggtcttcttgaagcaatcataaag
catgcaaacatggaacatcggctgggaaatctagaagatgccttctctctatatgaacag
gccattgccattgaaaagggaaaagaacattcacagacattaccaatgttatttgcacag
tattcacggtttgtatacttggtttctgggaatgctgaaaaagcgagggaaattatagtt
gaagcacttgagcatgttcaattgtcaaaacctcttcttgaggccctaatacattttgag
tccatacagtcactaccaaagcaaattgattacctggattccttggttgtgaagttcata
gtgcctaaccctgagaaccccaatgttgcgagcgttgcagagagagaagagctatctagc
atatttttggaattcataaatctctttggaggtacagaatctatcaagaaggcagaggat
cgacatgccaaacttttcttaccccatagaagcacatcagagttgaaaaagcggcatgct
gacgattatctagcatcagataaaacaaagattgccaaatcttactccagtgttccttca
cctgcccaatctttgatgggagcatatccaagtgcacaaacccagtggtcagcaggttat
ggcgttcagcctcaagcttggccaccagctacacaagctcagggacaacaacagtggacc
cctggctatacccaacagcaggcggcatacagtgcatatgggggttatggaagtagctat
actaatccacaattgcccgcaacaactacacagactactgcttatgctgcttatcctcct
acatattctgcccagcagactttccctccacaaagctatgcacagccaactgcggcgaca
gccgctgcacctgttccagcacagcagtctgcttcagctgcccaggcctattatgggact
tactattga
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