Ziziphus jujuba (Chinese jujube): 107434325
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Entry
107434325 CDS
T04794
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107434325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zju03021
]
107434325
03036 Chromosome and associated proteins [BR:
zju03036
]
107434325
Transcription machinery [BR:
zju03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107434325
Coactivators
SAGA/TFTC/STAGA complex
107434325
Chromosome and associated proteins [BR:
zju03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107434325
STAGA complex
107434325
TFTC complex
107434325
SAGA complex
107434325
SLIK complex
107434325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
TFIID-31kDa
Histone
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
107434325
NCBI-ProteinID:
XP_015901265
UniProt:
A0A6P4ARF8
LinkDB
All DBs
Position
1:join(39207593..39207718,39208152..39208238,39208888..39208989,39209057..39209168,39209488..39209591,39209691..39209828,39209934..39210029,39210667..39210791,39211045..39211177,39211626..39211751,39211832..39211943,39212786..39213150)
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AA seq
541 aa
AA seq
DB search
MSAVPKEAIEVIAQSIGINNLSPDVALALAPDVEYRVREIMQEAIKCMHHSRRTILTTDD
VDNALKLRNVEPIYGFASGDPLRFKRAAGHKDLFYINDKDVEFKNQVMAAPLPKAPLDVS
ISSHWLAIEGVQPSIPENAPVEALAASSDGKKSEYKEDGLSVDIKVPLKHVLSRELKLYF
EKITEITVSRSSSNLFKEALVSLAKDSGLHPLVPYFTYFIADEVTRNMSNFPILFALMRF
VRSLLQNPHIHIEPYLHQLMPSIITCLVAKRLGNRFSDKHWELRNFAASLVAIICKRFGH
VYHNLQPRVTRTLLHAFLDPTKALPQHYGAIQGLAALGPSVVRMLILPNLEPYMQLLEPE
MQLEKQRNEIKRHEAWRVYGALLHAAGQCMHDRMDFFRSFLSPPSRTIWKSNGKVATKLT
NKRKASADNLMPQPPLKKIAMEGRMGAMRMNSMQVDVQGATAGFPSAVGGSSLGVSSIPR
QLPNENFPGRQVGGQMVKTSSVLAQAWKEDMDAGHLLASLFEYFGESVFSYAPKSELSFF
L
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctgtgccgaaggaagcaatagaggtgattgcacagagcattggcattaacaat
ttgtcccctgatgttgcacttgctcttgctcctgatgtggaataccgtgtccgtgagatc
atgcaggaagcaattaaatgtatgcaccattcaagacggactatcctgacaacagatgat
gtggataatgcacttaaattaagaaatgtggagccaatctatggctttgcctctggagat
cctctgcggttcaagagagctgctggacataaggatttattctacatcaatgacaaggat
gtggaatttaaaaatcaggtgatggcagcacctttaccaaaagcaccacttgatgtatcc
attagttctcactggctggcaattgaaggtgtacaaccctcaattccagaaaatgctcct
gttgaagcacttgcagcatcctctgatggtaaaaaatctgaatacaaagaagatggactt
tctgttgacattaaagtacccttaaagcatgtactttcaagggaactaaagctttacttt
gagaaaataacggaaattactgttagcagatccagctccaacctcttcaaagaagcatta
gtgagcttggcaaaagattcaggacttcatcctttggttccttatttcacttacttcatt
gcagatgaggttacacggaacatgagtaactttcctatcctgtttgctttgatgcggttt
gttcgaagccttcttcaaaatccacacatacatatagaaccttatcttcaccaattaatg
ccatccatcattacctgccttgtagcaaaaagattgggcaatagattttctgacaagcac
tgggagcttagaaattttgctgcgagcctggttgctataatatgcaaaagattcgggcat
gtttatcacaaccttcagccacgtgtgactagaacactgcttcatgctttcttggaccca
acaaaagcattgcctcaacattatggtgcaattcaaggcctagcagctcttggtcccagc
gtggttcgtatgcttatattaccaaatctggagccatacatgcaacttcttgagccagaa
atgcaacttgagaagcaaaggaatgagattaagaggcatgaagcttggcgtgtgtatggg
gccttgctgcatgcagctggccaatgtatgcatgataggatggacttctttcgtagtttt
ctgtctccaccttctaggaccatttggaagagcaatgggaaggttgcaactaaattgaca
aacaaacgcaaagcaagtgccgacaacttgatgccacaaccacctttgaagaaaattgca
atggaaggcaggatgggagcaatgagaatgaactccatgcaagttgacgtgcaaggtgct
acagctggatttccctctgctgtagggggatccagtcttggtgtatcgtctataccccgc
caattaccaaatgaaaactttccagggaggcaagtgggtggtcaaatggtaaaaacatcg
agtgttcttgctcaggcttggaaagaggacatggatgcaggtcatttactcgcatcattg
ttcgaatattttggtgaaagtgttttctcctatgctcccaaatcagagttgtctttcttc
ttgtga
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