KEGG   Ziziphus jujuba (Chinese jujube): 107434354
Entry
107434354         CDS       T04794                                 
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
  KO
K12821  pre-mRNA-processing factor 40
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107434354
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zju03041]
    107434354
Spliceosome [BR:zju03041]
 Complex A
  U1 snRNP components
   U1 related factors
    107434354
 Complex B
    107434354
SSDB
Motif
Pfam: FF WW WW_TCERG1 FF_RHG35_4th
Other DBs
NCBI-GeneID: 107434354
NCBI-ProteinID: XP_048336340
LinkDB
Position
9:complement(join(15030530..15030535,15030661..15030915,15031451..15031550,15032008..15032072,15032225..15032332,15033312..15033404,15033476..15033523,15034310..15034408,15034572..15034688,15034809..15034862,15034929..15035021,15035107..15035187,15036127..15036232,15036362..15036396,15036494..15036580,15037128..15037205,15037278..15037346,15037453..15037548,15037855..15037927,15038017..15038375,15038483..15038540,15038624..15038676,15041751..15041820,15043811..15043887,15044011..15044202,15044292..15044633,15044747..15044785))
AA seq 950 aa
MDPPQTLPSMSSQFRPPIPALPQSQQFIPVGSQHFQPVGRGVPMVNVRVPPQAPKPPVYG
QPMPQLPPRPGQPGMLLPSQTVPLAVGQPKGHFTSESPLPLPSSQAPNNYMPSLGGGRGM
PLSSSYTFTPSYGVQRGNDGSTQYQSIPQVHVANVSSGGQLRPSTESQSTAIVTPMQQTN
EQPPMMNVAAPATSTQPSLSAEASSDWREHTSADGRRYYYNRKTKLSSWDKPLELMTATE
RADASTNWKEFTSLDGRKYYYNKVTKESKWRVPEELKLVREKVEKASVEETQQEMPVNSS
VPTSVSPTVAEPTPSGDTSSSKAEGVASSPVSVAPVPAADLQTMVVPRSSALPVVAATMK
TNTDGDQIPTNAVLTFDAVTGSAGTSVTGISIATEPMNNVNNFSAMDVVGSADEVHVLVK
EEDLKGVIGEKISDTASEDKTVDREPLVYGNKQEAKNAFKALLEDANIGCDWTWDRAMRV
IINDKRYGVLKTLGDRKQAFNEFLIQRKKQDAEERRMKQKKAREEFKKMLEESTELTSSM
RWGKAESLFESDERFKLVERDRDRRDLFENHVEELRKKERAKAQEERKCNIMEYRHFLES
CDFIKASSQWRRVQDRLEADERCLRLEKIDRLEIFVEYTRDLQKEEEEQKKIQKEELRKV
ERKNRDQFRKLMEDNVAAGLLTAKTHWREYCMKVKDLPAYKEVASNTSGPTPKDLFEDVA
EELQKQYHEDRTQIKDAIKLRKIMLSTAWTFEELKSAIVNDISSPPVSDTNLKLVFDELL
ERVREKEEKEAKRRKHLSDSFFHLLSSIKDITASSEWEDSKRLFEGSQECSSIGEASVCR
EIFERYVMQLKEHEQREQKRKEDKVRKEKEKRKVKQRKEKEASELEKDGADGETADVTEG
HFCKENRSSTKDGNRKERKRNSSEDYVDANEDERMTKSHGSSNDRKSRRA
NT seq 2853 nt   +upstreamnt  +downstreamnt
atggatcctcctcaaactttgccatccatgtcctctcaatttcggcctcccattccagca
ctgccacagtcacagcagttcattcctgtgggttctcagcattttcagccagttggtcgg
ggtgttccaatggtgaatgtcagagtgcctcctcaagcaccaaaaccacccgtatatggt
cagcccatgccgcaattgcctccaagacctggtcaaccaggtatgcttcttccatcacag
acggttccattggcagttggtcagcctaagggccattttacatcagaatcaccattgcct
ctgcctagcagtcaagcaccaaataattacatgcctagcctaggaggtggtcgaggaatg
ccgctctcttcctcatatacttttacaccttcttatggtgtacaaagaggcaatgatggt
tccacccagtatcagtctatacctcaagtgcatgttgcaaatgtttcttctgggggacaa
cttagaccatcaactgaaagccagagcactgccattgttacacctatgcagcaaactaat
gaacagcctccaatgatgaatgtcgctgctccagcaacaagtacccaacctagcctcagt
gcagaggcctcgtcggattggagagaacatacatctgctgatggaagaaggtattattat
aatagaaagacaaaactatcaagttgggataaacctttagaattgatgacagcaactgag
agggcagatgcatcaacaaattggaaggaatttactagtctcgatggaagaaagtattat
tataacaaagtcaccaaagaatcaaaatggagagttcctgaggagctgaagttggtacga
gaaaaagtagaaaaagcttctgttgaggaaacacaacaagaaatgcctgtgaatagtagt
gtcccaacttctgtatctcctactgtggctgagcctacacctagtggcgatacctcatct
tccaaagctgaaggagttgcatcaagccctgtttcagtagcacctgttccggctgctgat
ctgcaaactatggtggttccaagatcatctgccttaccggttgtagctgctacaatgaaa
acaaatacagatggagatcagatacctacaaatgctgtattaacatttgatgctgtaact
ggaagtgctggaacttctgttacaggaattagtatcgctacagaaccaatgaataatgtc
aataatttttcagcaatggatgttgtcggttctgcagatgaagttcatgtactagttaaa
gaggaagatttgaaaggtgtaataggagagaaaatcagtgatacagcatcagaagataaa
actgttgatagagaacctttagtatatggaaataagcaggaggcaaaaaatgcatttaaa
gcgctcttggaggatgccaatattgggtgtgattggacatgggatcgggccatgagagta
ataattaatgacaaaagatatggtgttttaaaaacgcttggagatcggaagcaagctttt
aatgagttcttgattcaaaggaaaaaacaggatgctgaggaaagacgcatgaagcagaaa
aaggctcgggaagaattcaaaaaaatgttggaagaatccacagagctgacatcatccatg
agatggggcaaagcagaaagtctgtttgaaagtgatgagagatttaaacttgttgagcgg
gatagggatcggagggatttatttgagaaccatgtggaggaactgaggaagaaggaacga
gcaaaggcacaggaggaaaggaaatgcaatataatggaatacaggcactttttggaatct
tgtgactttattaaggcaagcagccagtggcgaagagttcaagaccgattagaggctgat
gaaagatgtttacggcttgaaaaaattgatcgcttggaaatttttgtggagtatacacgc
gatctgcagaaagaagaggaggaacagaagaagatacagaaggaagaattgaggaaggta
gagcgtaaaaaccgtgatcagttccgcaaattgatggaagataatgttgctgcaggtttg
cttacagcgaaaactcactggcgtgaatattgcatgaaggttaaagatttacctgcgtat
aaggaagttgcttcaaatacctcaggtccaactcctaaagacttgtttgaagatgtagct
gaggagcttcagaaacaatatcatgaggatagaacacagattaaagatgccatcaagttg
agaaagatcatgctttcaacagcctggacatttgaagaattaaaaagtgcgattgtaaat
gatattagctccccaccagtgtcagataccaatttaaagctagtatttgatgaattactt
gaaagagtcagggagaaggaggaaaaagaagctaaaaggcgtaaacacctttctgatagt
ttctttcatcttctatcttctatcaaggatataactgcatcttcggagtgggaggacagc
aaacgactttttgaaggtagtcaggagtgcagttccattggtgaggctagcgtttgcagg
gagatatttgagagatacgtaatgcaactgaaagagcatgaacagagggaacagaaaaga
aaggaggataaggtgaggaaagaaaaagagaaaagaaaggtcaagcaaaggaaggaaaaa
gaggctagtgagttagaaaaagatggagcagatggcgaaactgctgatgttactgaaggt
catttttgtaaagagaacagaagttcaaccaaagacggtaatagaaaagaaaggaagcgg
aatagtagtgaggattatgtggatgcaaatgaggatgaacggatgacgaaatcccatgga
tctagcaatgacaggaaatcaaggcgggcataa

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