KEGG   Ziziphus jujuba (Chinese jujube): 107434442
Entry
107434442         CDS       T04794                                 
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03013  Nucleocytoplasmic transport
zju03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107434442
  09122 Translation
   03013 Nucleocytoplasmic transport
    107434442
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zju03019]
    107434442
   03041 Spliceosome [BR:zju03041]
    107434442
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     107434442
Spliceosome [BR:zju03041]
 Complex C
  Other components
   EJC/TREX
    107434442
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107434442
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2 LIM_bind
Other DBs
NCBI-GeneID: 107434442
NCBI-ProteinID: XP_048318629
UniProt: A0ABM3I1E4
LinkDB
Position
12:join(18440470..18440604,18440777..18440902,18441762..18441803,18442366..18442425,18442549..18442611,18443038..18443118,18443725..18443796,18443905..18443952,18444053..18444121,18444224..18444357,18444939..18445014,18445406..18445599,18445955..18446035,18446200..18446410,18446551..18446793,18446887..18446967,18447097..18447216,18447326..18447385,18448555..18448682,18451883..18451979,18452063..18452191,18452733..18452836,18453290..18453470,18453740..18453921,18454259..18454865,18455017..18455121,18456146..18456301,18456388..18456468,18456544..18456981,18457615..18458775,18459797..18460119,18460500..18460569)
AA seq 1885 aa
MSLPPVECAYITEDCLREWKNGNPNFKLPEPVPVLRFLYELCSIMVRGELPFQKCKTVLE
SVVFSERVSDEVLGSSLADIVTQMAQDLTMTGENRARLIKWAKWLVDSTLVPLRLFQERC
EEEFLWDAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRNLETS
SQNVSGAMIGIIKSLIGHFDLDPNRVFDIVLECFELQPDDNVFLELIPIFPKSHASQILG
FKFQYYQRMEVNFPVPFGLYKLTALLVKEDFIDLDSIYAHLLPRDDEAFEHYNSFSTKRL
DEARKIGKINLAATGKDLMDDEKQGDVTIDLFTALDIETEAAVERSPELENNQTLGLLTG
FLSVDDWYHANTLFDRLSPLNPVEHVEICNSLFGLIEKSISSAYDTVHRANYQSFGSSSG
ASVDAMDVEASSTHGSLIDLPKELFQMLACAGPYLYRDTLLLQKVCRVLRGYYRSALQLV
SSGEGIPNSGTVSGVNRAPRLHLKEARSRIEEALGTCLLPSLQLIPANPAVGQEIWEVMN
LLPYEVRYRLYGEWEKEDERNPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHA
NPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKDDGLN
LSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTE
NLTEEQLDAMAGSETLRYQATSFGVTRNNKALVKSTNRLRDSLLSKDEPKLAIPLLLLIA
QHRSVVLINANAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLDDLVHLY
HLDPEVAFLIYRPVMRLFKCQGSSEVFWPLDGNEASSITTANSESEPTEPSATLVLDLGS
LRKPIIWSDLLNTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEIAKQHAAL
KALEELSDNSSSAITKRKKDKERIQESLDRLTSELRKHEENVASVHRRLSREKDRWLSSC
PDTLKINMEFLQRCIFPRCTFSMPDAVYCAEFVHTLHSLGTPFFNTVNHIDVLICKTLQP
MICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQ
FIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVTKIK
SDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSLAAKSSVPNSVALQSSS
AISISLSEPAGGKASLTDAANPIKDQMLKTKPADGRLERAEGVSNVKSDSGNIKLKGGST
ANGSDALAVLQSGTSRSIENQKQVDEFSNRTVDDNVTRVGPKNSLESESRAQPKRSTAAG
SLSKPPKQDIAKDDARSGKAIGRTSGSLTVDRDNTSHTSEGRLAGPTNVASAVTANGNSV
SASAKSSAMSMRTSSDGHGNESKVENTAAKSSDTRISTLKDDSTEILDAPRLPSSRLHSP
RHDSSASASKSSDKMQKRASPAEDADRLSKRRKGDAEMRDFEGDVRFSDRERSVDARSGD
LDKSGTDEQNAYRGADKSLDRSKDKGNDRHDKDYRDRMERPDKSRADDLAEKTRDRSMER
YGRERSVERGQDRGTDRNFDRLPEKAKDDRGKVRHSDTSTEKSHGDDRFHGQSLPPPPPL
PPHMVPQSVNAGRRDEDADRRFGTTRHTQRLSPRHEEKERRRSEESLVSQDDSKRRREDD
FRERKRDDREGLSMKVEERDRERERDREREREKANLLKEDIDATAASKRRKLKREHLPTG
EAGEYSPVAPPPPPVGMTTQSYDGRDRVDRKGAMVQRTGYLEEPSRIHGKEVASKMTRRD
LDPMYEREWDDEKRPRAEQKRRHRK
NT seq 5658 nt   +upstreamnt  +downstreamnt
atgtctttaccacctgtagagtgtgcgtacattacggaggattgccttcgggaatggaaa
aacggaaaccctaacttcaagctccccgaacctgtacccgtgcttcgcttcctctacgag
ctctgctctattatggttcggggtgaattgccgttccagaagtgtaaaacggtgttggaa
tcggttgtgttctcggagagggtttcagacgaagtattgggttcaagtttagcggatatt
gtgactcaaatggctcaagatcttacaatgacgggagagaaccgtgctcgtctcataaaa
tgggcaaaatggctggtggactctacattagttccactgaggcttttccaggagcgttgt
gaggaagagtttctttgggatgctgaaatgatcaagataaaggctcaggaattaaagagt
aaagaggtccgagtaaacacgcgtcttctttatcagcagacaaaatttaatcttctccga
gaagagagtgagggctatgctaagctggttacccttctttgcagaaatttggaaacttca
tcacaaaatgtatcaggagcaatgattggaattattaagtcattgattggacattttgat
ctggatccaaatcgtgtttttgacattgtactggagtgttttgagcttcagccagatgat
aatgtctttctggagcttatcccaatatttcccaagtctcatgcttcccagattcttggt
tttaaatttcaatattatcagcggatggaagtaaattttcctgtaccttttggactctat
aagcttacagctttactggtgaaggaagattttatagatcttgacagcatatatgcacat
ttacttccaagggatgatgaggcatttgagcattataattcattttcaacaaaacgtctt
gatgaggccagaaaaattgggaaaataaaccttgctgctactggaaaggatctaatggat
gatgagaagcaaggagatgtgacaatagatctttttactgctttagacatagaaaccgag
gcagctgttgagcggtctccagagcttgaaaataatcaaactttgggcttgctaactggt
ttcctttctgtggatgattggtaccatgcaaatacactttttgatcgtctctcacctcta
aatcctgtggagcatgttgaaatttgtaacagcttattcgggcttattgaaaagtcaatc
agttccgcttatgacactgttcatcgagcaaattatcagagctttgggtcttcttctgga
gctagtgttgatgcaatggatgtagaagcttcatcaacccatggatctttaatagatctt
cctaaagaactttttcagatgcttgcttgtgctggaccatatctttaccgtgatacttta
ttgctgcagaaggtgtgtcgagtgttgagaggttactacaggtctgcacttcagcttgta
agtagtggtgaaggtattccaaattctggaacggttagtggcgtgaatcgagctcctcgt
ttgcacctaaaggaagctaggtcaaggatagaggaagctttaggaacatgtttgcttcct
tctttacaactgatacctgcaaatccggctgttggacaagagatttgggaagtgatgaat
ctccttccatatgaggtgcgatatcgcttatacggtgaatgggaaaaagaagatgagcgg
aatcctatgcttttggctgcaaggcaaacagcgaagttggacactagaaggattttgaag
aggcttgcaaaggaaaacttgaagcaactgggtcggatggttgcaaaattagctcatgcc
aaccctatgactgtacttcggaccattgttcatcagattgaagcatatagggatatgata
actcctgttgtagatgcatttaagtatctcacacagcttgagtatgatgttttggagtat
gtcgtgattgaacgcttggcacaaggaggacgtgataagctgaaggatgatggccttaat
ttatcagactggcttcagtcactggcttcattttggggtcacctgtgcaagaagtatcca
tccatggaattgaggggccttttccaatatcttgtaaatcaattaaaaaagggacaaggt
attgagcttgttctcctgcaggagcttattcaacaaatggcaaatgtccagtacaccgag
aacttaactgaagagcagctggatgccatggcagggagtgagactctccggtatcaagca
acttcatttggtgtaactcgaaataacaaggcattggtcaagtctactaacaggttacgg
gactcattgctttcaaaggatgaaccaaagctggctatcccccttttgctacttattgct
cagcatcgttctgtggttctaattaatgcaaatgcaccgtatatcaagatggtcagcgag
cagttcgatagatgtcatggaactcttcttcagtatgtggaattcctttctagtgctgtg
actccagcatcagcttatgctcagctgattccctcacttgatgatcttgtccacctatac
caccttgaccctgaggttgcgttcttaatatatcgtcctgtaatgagacttttcaagtgc
cagggaagttctgaggtcttttggcctttagacggcaatgaggcatcaagtatcactact
gcaaattcagagtctgaacctacagagccttctgccactctggttttggatcttggttct
ctgcggaaacctataatatggtcagatcttctcaacactgtgaaaaccatgttgccttca
aaagcctggaatagcttgtcccctgatctctatgcaacattttgggggctcacactctat
gacctttatgttcctagaaatcgttatgaatctgaaattgccaagcagcacgctgctctt
aaagccttggaagagctctctgacaattcaagttcagcaatcaccaaaaggaaaaaggac
aaggaaaggattcaagaatctctagatcgcctaacaagtgagcttcgtaaacacgaggaa
aatgttgcatctgttcacagacggttatctcgtgaaaaggacagatggttgagttcctgc
cctgatactctaaagatcaatatggagtttcttcagcgttgcatatttccccgctgcact
ttcagtatgccagatgctgtctattgtgccgagtttgtgcacactcttcattcccttggg
actccatttttcaacactgtcaaccatattgacgttctgatatgtaaaaccttgcaacct
atgatatgctgttgcaccgaatatgaagctggtagactggggaggttcttgtatgagaca
ttgaagattgcttattattggaagagtgatgaatctatttatgaacgtgaatgtggaaac
atgccaggctttgctgtgtattatagatatccaaatagccaacgagttacatatggtcag
ttcattaaggtgcactggaaatggagtcaacggataacacggctattgattcagtgtcta
gaatctactgagtatatggaaattcgaaatgccctcataatgctgacaaaaatctccagt
gttttcccagttactcgaaaaagtgggattaaccttgaaaaacgggtaaccaagattaaa
agtgatgagagagaagatctcaaggtgttagctacaggtgttgctgctgctttggctgct
agaaagccatcatgggttacagatgaagaatttggcatgggctatcttgaattaaagcct
gcgccatctcttgctgcaaagtcttcagttcctaattctgtagctttacaaagtagttct
gctataagtatttcactgagtgaacctgctggtggaaaagcaagtcttacagatgctgct
aatcccataaaagaccagatgctaaaaacaaaacctgctgatggaagattggaaagagca
gaaggagtctcaaatgtgaaatctgattcaggaaatattaagcttaaaggtggctcaacg
gccaatgggtcagatgctttggctgtcttacaatctggaacatcaagatcaattgaaaat
caaaaacaagtggatgaattctcaaatagaacagtggatgacaatgtcacaagagttggc
ccgaagaattccttggaatctgagtcaagagcccaaccaaaacgatctacagctgctgga
tcactttctaagccaccaaaacaagatatcgcaaaagatgatgctagatctggaaaagct
attggcagaacttctggttctttgacagttgacagagataacacatctcatacatcagaa
ggaaggcttgctgggcctactaatgttgcttctgcagtcacagccaatgggaactcagtt
tcagcttcagctaaaagctcagctatgtccatgagaacatcatcagatggtcatggtaat
gaatcgaaggtagagaatacagctgccaagtcttctgacactagaatctctactttgaag
gatgatagcactgaaattttagatgcaccgcggcttccttcttctcgacttcattctcct
cggcatgatagttcagcttctgcttcaaaatccagtgataagatgcaaaagagagctagt
cctgccgaagatgctgacagactaagtaaacgacggaaaggtgatgctgagatgagagat
tttgaaggtgatgttcgattctctgaccgagagaggtctgttgatgctcggtctggggat
cttgacaagtcgggaactgatgaacaaaatgcctataggggtgctgataaatctttggat
cgttcaaaagataagggcaatgatagacatgacaaggattatagagatagaatggagcga
cctgacaagtctcgcgctgatgatttagctgaaaaaaccagagatcggtcaatggaaaga
tatggaagagagcgttctgttgagagaggtcaagacagaggtactgataggaattttgat
agactccctgagaaagctaaggatgatagaggaaaagtaaggcatagtgacacatcaaca
gaaaaatctcatggtgatgataggtttcatggtcaaagcttgcctcccccgccacctttg
cctccgcacatggttccccaatctgttaatgctggtagaagagatgaagatgctgacaga
agattcggaactacaagacatacacaaaggctttctccaagacatgaggagaaggagcga
agacggtctgaggaatccttggtttcacaagacgattcaaaacgtagaagggaagatgat
tttcgtgagagaaagcgagatgatcgagaagggttgtcaatgaaggtagaagaaagggat
agagagagggagagggatagagagagagaaagggagaaagcaaaccttttgaaggaagat
atagatgcaactgcagcttcgaagaggcggaaacttaaaagggagcacctgccaacaggt
gaagctggtgagtattcaccagttgcccctccacctccccccgttggtatgacgacacag
tcatatgatggaagagatagggtagaccgcaagggagctatggtccaacgtacgggctac
ttggaagaaccaagcaggattcatggaaaagaagtagccagcaaaatgactcgtcgtgac
cttgatccgatgtacgagcgcgaatgggatgatgagaagaggccaagagctgagcagaag
cggagacatcgcaagtaa

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