Ziziphus jujuba (Chinese jujube): 107435426
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Entry
107435426 CDS
T04794
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107435426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zju03019
]
107435426
Messenger RNA biogenesis [BR:
zju03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107435426
mRNA degradation factors
5'-3' decay
Lsm complex
107435426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
107435426
NCBI-ProteinID:
XP_015902522
UniProt:
A0A6P4B1F4
LinkDB
All DBs
Position
1:complement(join(41652911..41652988,41653910..41653972,41654078..41654193,41654279..41654347,41654990..41655050))
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGTLRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAAEIKRAQKAEREATDLKGSMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggtccggaagatatctacctttctacttctctcgccagctatcttgac
aaaaaacttcttgtgctacttcgagatggtagaaaacttttggggacccttcgttctttt
gatcaatttgccaatgctgttcttgagggtgcatgtgagagagtcattgttggtgatctt
tactgtgacatccctttaggtctttatgtaatccggggggagaatgttgttttaattggt
gagctggacttggaaagggaggaacttccccctcatatgactcgtgtttcagcagcagaa
atcaaaagggcacagaaggcagaaagagaggctaccgatcttaaagggtccatgagaaaa
agaatggagttccttgatttggactaa
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