KEGG   Ziziphus jujuba (Chinese jujube): 107435987
Entry
107435987         CDS       T04794                                 
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
  KO
K15172  transcription elongation factor SPT5
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    107435987
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    107435987
   03019 Messenger RNA biogenesis [BR:zju03019]
    107435987
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     107435987
  RNA polymerase I system
     107435987
Messenger RNA biogenesis [BR:zju03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     107435987
SSDB
Motif
Pfam: KOW1_SPT5 Spt5-NGN KOW4_SPT5 KOW6_SPT51-2 KOW2_Spt5 KOW7_SPT5 KOW KOWx_SPT5 KOW5_SPT5 Spt5_N GPKOW_C DUF4438
Other DBs
NCBI-GeneID: 107435987
NCBI-ProteinID: XP_015903111
UniProt: A0A6P4B2U5
LinkDB
Position
5:complement(join(30376403..30376648,30377181..30377281,30377817..30377960,30378069..30378186,30378284..30378338,30378722..30378800,30378935..30379029,30379105..30379153,30379225..30379383,30379472..30379553,30379665..30379808,30379888..30380040,30380125..30380173,30380273..30380370,30380478..30380633,30380776..30381133,30381213..30381283,30381544..30381627,30381718..30381876,30382004..30382150,30382240..30382478,30384604..30384928))
AA seq 1036 aa
MRRRDEDDDDLEPEEEDDEDYGEQEQNLDDELEEEEEEEDVGRGRSKSKRRRSEEVYEDE
EEYEDEDDDYGGGGSRKRRNKRSSGSQFFDLEAEVDTDDEEEEDEGEDDFIDESGADIPD
EDVGRGMHRSTLLPREEDQEDYEALERRIQARYAKSSHREYDEETTDVDQQALLPSVRDP
KFWMVKCAIGREREVAVCLMQKFIDKGSELQITSAFALDHLKNYIYVEAHKEAHVREACK
GLRNLYTQSIKMVPIREMTDVLSVESKSIDLSRDTWVRMKIGTYKRDLAKVVDVDDVRQR
VTVKLIPRVDLQALASKLDGREVVKKKAFVPPPRFINADEVRDLNIRVERRRDPMSGDYF
DNIGGMLFKDGFLYKTVSMKSISTQNINPTFDELEKFRKPGENGDGDIGSLSTLFANRKK
GHFMKGDAVIVVKGDLKNLKGWVDKVEEENVHIRPDGEGLPKTVAVNEKELCKYFEPGNH
VKVVSGTHKGATGMVVKVEQHVLIIISDTTKEDVRVFADDVVESSEVTSGITRIGDYELH
DLVLLDNNSFGVIIRVESEAFQVLKGVTERPEVSLVRLREIKCKIDKKNSVQDRHKNTIC
VKDVVRIVDGPCKGKQGPVEHIYRGVLFIFDRHHLEHAGFICAKSQSCSVVGGSRANGDR
NGDAFSQFKTPRIPPSPRRFSRGGPPIDSGGRHRGGRGHDGMVGAIVKISQGNFKGYKGR
VKDIKGQTVRIELESQMRVVTVDRKCISDNFNTSTPYRDTPRYGMGSETPMHPSRTPLHP
YMTPMRDAGATPIHDGMRTPMRDRAWNPFAPMSPPRDNWEDGNPASWGASPQYQPGSPPS
RPYEAPTPGSGWVNTPGGNYSEAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSVSYLPG
TPGGQPMTPGTGGLDVMSPVIGGDNEGPWFMPDVLVNVRRSGEESIVGIVREVLQDGSCR
VVLGLSGNGEIISALPNEMEAVVPRKGDKIKITGGSLRGATGKLIGVDGTDGIVKVDDTY
DVKILDLAILAKLAQP
NT seq 3111 nt   +upstreamnt  +downstreamnt
atgcgtcggcgagacgaggacgacgacgatctggagccggaggaggaagacgatgaagac
tatggggaacaggagcaaaacctagacgacgagcttgaggaagaggaggaggaggaagat
gtgggcagaggccgctccaaaagtaagcggaggagatcggaagaagtctatgaggatgaa
gaagaatatgaggatgaagatgatgactatggcggtggcggcagtaggaagcgccgcaac
aagaggtcctccggttcgcagttttttgatctcgaggccgaagttgatactgatgatgaa
gaggaggaggatgaaggcgaagatgacttcatagatgagagtggagctgacatccctgat
gaggatgttggtagagggatgcatcgtagtacattgcttccacgtgaggaggaccaagaa
gattatgaggctcttgagagaagaattcaggcaagatatgccaagtctagtcacagagaa
tatgatgaggaaactacagacgtagatcagcaagctctattgccatctgttagggatcca
aagttttggatggttaaatgtgcgattggtcgtgagcgagaggttgcggtttgcttgatg
caaaagttcattgataaaggatctgaattgcaaatcacgtctgcttttgctcttgatcac
ctgaaaaattatatttatgttgaagcacataaagaagcccatgttagagaggcttgcaaa
ggcctgcgcaatttgtacacccagtcaattaagatggttcctattcgagaaatgactgat
gttctttcagttgaaagcaaatcaatagatctttcgagggatacttgggttaggatgaag
attgggacgtataaaagagatcttgctaaggtggtagatgtggatgatgtgcggcaaaga
gttactgtgaaattaattccaagagttgatttacaggctcttgcaagtaaattggatgga
agggaagttgtgaaaaagaaggcatttgttcctccaccccgctttataaatgctgatgaa
gttagggatctgaatattcgtgtggagcgtagacgagatccaatgagtggtgattatttt
gataatattggtggaatgctctttaaagatggtttcttatataaaacggtatcgatgaaa
tctattagtactcaaaatatcaatcccacttttgatgaacttgaaaaatttcggaagcct
ggtgaaaatggagatggagatattggtagtctgtctacattgtttgcaaaccggaaaaag
gggcactttatgaagggtgatgcagttattgttgtcaagggagatctgaaaaatttgaaa
ggatgggttgataaagttgaggaagaaaatgttcatatcagaccagatggggagggcctt
ccaaaaactgttgccgtaaatgaaaaagagctttgcaagtactttgaacccgggaaccat
gtgaaagttgtctctggtactcacaaaggtgcaactggtatggtcgttaaggttgagcag
catgtgcttataattatatccgatacgacaaaggaagatgtccgtgtgtttgcggatgat
gttgtggagagctctgaggtgacatctggcattaccagaattggggattatgaactacat
gatcttgtcttactggataacaatagctttggtgttattatacgtgtagaaagtgaagca
tttcaggtgcttaagggagtgacagagagacctgaggtttctcttgtcagattaagagag
ataaaatgcaagatagataaaaaaaatagtgtgcaagatcgacataagaatacaatatgt
gtgaaagatgttgtgaggatcgttgatggcccttgtaaaggaaagcaaggtcctgtggaa
cacatatacaggggagtattatttatctttgaccgccatcatcttgagcatgcaggtttt
atttgtgctaagtcacaatcttgttctgtggtgggaggatctcgtgccaatggtgataga
aatggtgatgctttttcacaattcaaaactcctcgtattcccccatcgcctaggagattt
tctagaggaggccctccaattgactctggtgggaggcatagaggtggaagagggcatgat
ggtatggttggtgctatagtaaaaattagccagggtaattttaagggctataaaggccgc
gttaaagacatcaaaggacaaactgtacggattgaattggagtcccaaatgagggttgtt
acagttgataggaaatgcatttctgacaacttcaatactagcactccatatcgtgacaca
cctcgatatggtatgggaagtgagactccaatgcatccttctagaactccactacatcca
tacatgacccccatgagagatgctggagctacacctattcatgatggcatgaggacgccc
atgcgtgacagagcttggaatccttttgcaccaatgagtcctccgagggacaattgggag
gatggaaaccctgcatcttggggagctagccctcagtatcagccaggaagtcctccttca
cgtccatatgaagcaccaactcctggttcaggttgggttaacacacctggtggcaattat
agtgaagctggaacaccaagggacagtggttcggcatatgccaatgctccaagcccatac
ttaccatcaacccctggtggacagccaatgacgccaaattcagtatcttatcttccagga
acccctggagggcaaccaatgacaccaggcactggtggtctggatgttatgtcacctgtc
ataggtggagataatgaagggccgtggttcatgccagacgtattggtcaatgtacgcagg
tctggagaggaatccattgttggtattgtccgagaggttctccaggatggttcttgtagg
gtggttcttggattgagtggcaatggtgaaataatatcggcacttcctaatgaaatggag
gcagtggtaccaaggaagggcgacaagatcaagatcacgggtggttctttacgtggtgcc
actggcaagctgattggtgtggatggtactgatggaattgtaaaagtagatgacacatat
gatgttaagattttggacttggctatattggccaaattagctcagccatga

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