KEGG   Ziziphus jujuba (Chinese jujube): 125419620
Entry
125419620         CDS       T04794                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9A isoform X2
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
zju  Ziziphus jujuba (Chinese jujube)
Pathway
zju03020  RNA polymerase
zju03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zju00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    125419620
  09124 Replication and repair
   03420 Nucleotide excision repair
    125419620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zju03021]
    125419620
   03400 DNA repair and recombination proteins [BR:zju03400]
    125419620
Transcription machinery [BR:zju03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     125419620
DNA repair and recombination proteins [BR:zju03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      125419620
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS
Other DBs
NCBI-GeneID: 125419620
NCBI-ProteinID: XP_048321884
LinkDB
Position
11:join(27508253..27508281,27508457..27508532,27509229..27509387,27509808..27509888)
AA seq 114 aa
MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLH
DVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagtactatgaagttttgccgcgaatgcaacaacattctgtatccaaaggaggacaag
gagcagaagattctcctctatgcttgccgcaactgcgatcaccaggaagttgctgagaac
aactgtgtctatagaaatgagatacaccactctgttggagaacgtactcaagtattgcat
gatgtagctgcagatccaactcttcctcggacgaaagctgtacgttgtgctcagtgtaac
catggagaagctgtcttctttcaggcaactgctagaggcgaggaggggatgacactgttt
tttgtttgctgcaaccccaactgtggacataggtggagagattga

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