Ziziphus jujuba (Chinese jujube): 125423958
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Entry
125423958 CDS
T04794
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
zju
Ziziphus jujuba (Chinese jujube)
Pathway
zju03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zju00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125423958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zju03021
]
125423958
Transcription machinery [BR:
zju03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
125423958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
125423958
NCBI-ProteinID:
XP_048335929
LinkDB
All DBs
Position
1:complement(join(8584987..8585076,8585422..8585631,8585765..8585980,8586264..8586398,8587563..8587678,8587894..8588267,8588484..8588629,8589356..8589514,8589955..8590125))
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AA seq
538 aa
AA seq
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MSLDLMLKPCCSGCRSTTELYGSNCKHMTLCLTCGKTMAENHVKCSECGVAVTRLIREYN
VRASSTNDKNYFIGRFAGGLPNFSKKKNAENRWSLIKDGLQGRQVTDTLREKYKNKPWLL
EDETGQYQYQGQLEGAQSATYYLLIKQGKEFAAIPAASWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYQRWMMKAANNGAAAFGEVEKFDDKDSSAAAGRGRRKASGDDDEGNVSDRG
EEDGDEEAARKNRLGLNKKSGDDDDEEGPRERDLDLDDDDVEKGDDWEHEEIFTDDDEAV
GNDPEEREDLAPEVPAPPEIKQDDEDEDEDDEDGGGLSKSGKELKKLLGRTGGLNDSDAE
DDDDDEDMEDEIGLPPAVTTKKEAPKEEPADSTPVKPVPSGSAKGTPSSSKSSKTKRKLN
VDDAKSSNGAPPKKVKTENEQKTSAKDESLPASKNNLPSKGTQQSSKTAGTSSAGPVTEE
EIRAVLMQKTPVTTQDLVAKFKARLRCSEDKTAFAEILRRISKIQKSNGSNYVVLRDK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctggatctgatgctaaagccttgctgcagtggttgtcgatcaaccacggagctt
tacggcagcaattgcaagcacatgactctctgcttgacatgcggcaaaaccatggctgag
aaccacgtcaagtgcagcgagtgtggcgttgccgtgactcggttaatacgagaatataat
gttcgtgcaagttctaccaacgacaagaactactttattggtagatttgccggtgggttg
ccaaatttttcaaaaaagaagaatgctgaaaacaggtggtctcttattaaagatggactg
caaggacgccaagtcactgataccttgcgggagaagtataagaacaaaccttggctcttg
gaggacgaaacaggccagtatcagtatcagggtcagcttgaaggtgcacaatcagcaact
tattacctcttaattaagcaagggaaggagtttgctgccattcctgctgcttcgtggtac
aactttaataaggttgcacagtataaacaacttactttggaggaagcagaagagaagatg
aagaatcggaagaagactgcagatggttatcaaagatggatgatgaaagctgcaaataat
ggcgctgctgcatttggtgaagtggagaagtttgatgacaaagatagtagtgctgctgct
ggaagaggacgtagaaaagcatctggtgatgatgatgaaggcaatgtatcggatagaggg
gaagaagatggagacgaagaggcagcaagaaagaatagacttggactaaacaaaaaatct
ggtgatgatgatgatgaagaaggtccaagggaacgcgaccttgatttggatgatgatgat
gttgagaagggtgatgattgggagcatgaagaaatttttactgatgacgatgaagctgtt
ggtaatgatccagaagaaagggaagatttggcacctgaagttccagctccaccagaaatt
aagcaggacgatgaggatgaagatgaagatgacgaagatgggggtggactgagcaaatct
ggaaaagagttgaagaagttgcttgggcgaactggtgggctaaatgattcagatgcagag
gatgatgatgatgatgaagatatggaggatgagattggccttcccccagcagtgactaca
aagaaagaagcacctaaagaggaacccgcagacagcactcctgtaaaaccagtgccttct
ggatctgccaagggaaccccatcttcctctaaatcatcaaaaacaaagagaaaactgaac
gttgatgatgctaaatcctctaatggtgcaccaccaaagaaggtgaagacagaaaatgaa
caaaaaacttctgctaaagatgagtcgttgccagcttctaaaaataatttgccttcaaag
ggcacgcaacaatcctccaaaacagcagggacttcatctgctggacctgtaactgaagaa
gaaatcagggctgttttgatgcaaaagacaccagtgaccacgcaggatcttgttgcaaaa
tttaaggcgaggctcagatgttcggaggacaagactgcttttgctgaaatcctgagaaga
atttccaagatacaaaagtccaacggatccaattacgttgtgctgagggataaatga
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