Zobellia laminariae: Q5W13_05115
Help
Entry
Q5W13_05115 CDS
T09239
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
zla
Zobellia laminariae
Pathway
zla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q5W13_05115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zla03019
]
Q5W13_05115
Enzymes [BR:
zla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q5W13_05115
Messenger RNA biogenesis [BR:
zla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q5W13_05115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
UTP25_NTPase-like
CMS1
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WKX77436
LinkDB
All DBs
Position
1060648..1062015
Genome browser
AA seq
455 aa
AA seq
DB search
MNTFEDFKIKKQLQKAIVDLGFDEPTPIQQESYSPILGGTDFVGIAQTGTGKTIAFLLPI
LQDLKYSDQKHPRVLILAPTRELVIQIVEQIEKLTPYLSVRALGVYGGSNNINNQKRAVA
EGQDIIVGTPRRLYDLVLANVLRLKSIKKLVIDEVDVMLDFGYKTQLRNIFEYLPTKRQN
ILFSATMTTYVDQLMNDFLVNPVKKTISISGTPLESISQEAYAVPNFYTKANLLHHLLED
RDEYNKVLIFVGSKISADRLAETLENFESEISVIHSSKEQNHRTKSIEKFENGKSRILIA
TDVIARGIDIDKISTVISFDTPYYPENYIHRIGRTGRAGEQGRSILFYNEKETELKEAIE
SLMNYKIPFNEFPKEVEISSELTPEEDVKPVDPHAELADDDSTIQKGASFHKKSAKNSKV
RNEVKSYERKIKKKYKKPQKRGDKIQNKNSSKKKW
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaatactttcgaagatttcaaaataaaaaagcagttacaaaaggctattgtagattta
gggtttgatgaaccaacacctattcaacaagagtcttattcccccatccttggcggcact
gattttgttggtattgcccaaaccggaactggaaagacaattgcattccttctacctatt
ttgcaggatttgaaatattcagatcaaaaacaccctagggttttaatcctagcgccaact
agagaactcgtaattcaaatagtagagcaaatagaaaaactaacgccataccttagtgta
agggcactgggtgtttacggtggttctaacaacataaacaatcaaaaaagagctgtagcg
gaaggtcaagatataattgtaggtacgcctagaagattatatgacttggtgcttgctaat
gtactccgactaaaatcaatcaaaaaattggttattgacgaagttgatgttatgctagat
tttggttataaaacgcagctaaggaacatctttgagtatctaccaacaaagcgtcagaac
atccttttttctgccactatgactacttacgtagaccaattgatgaacgatttcttagtt
aacccggttaagaaaaccatttctataagtggaacacctttggaaagtattagtcaagaa
gcctatgctgttcctaatttctataccaaggccaacttactacatcatctgttagaagat
agagatgagtacaacaaagtattaatctttgtaggtagcaagatcagtgcagatagactt
gctgaaacattagaaaattttgaatctgaaatttctgtaattcactcaagtaaagaacaa
aaccaccgtacaaaatccatagagaaatttgaaaacggtaaaagtagaatccttatcgcg
acagatgtaattgctcgtggtattgatattgataaaattagtacggtaattagttttgat
acaccttactacccagaaaactacatccacaggattggtagaaccggtagagctggtgaa
caaggaaggtctattctcttttacaatgaaaaagagaccgaattaaaagaggctattgaa
agtttaatgaactacaagataccttttaatgagtttcctaaggaagtagaaattagctct
gaactaacacctgaagaagatgttaaacctgtagatccacacgcagagctggccgatgat
gactctactattcaaaaaggagcttcttttcacaagaaatctgccaaaaacagtaaagtg
cggaacgaggtaaaaagctacgagagaaaaattaaaaagaagtacaaaaagccacagaaa
cgaggagataaaatccaaaacaaaaatagtagtaagaagaagtggtaa
DBGET
integrated database retrieval system
