Zobellia laminariae: Q5W13_13785
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Entry
Q5W13_13785 CDS
T09239
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
zla
Zobellia laminariae
Pathway
zla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q5W13_13785 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zla03021
]
Q5W13_13785 (rho)
03019 Messenger RNA biogenesis [BR:
zla03019
]
Q5W13_13785 (rho)
Transcription machinery [BR:
zla03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Q5W13_13785 (rho)
Messenger RNA biogenesis [BR:
zla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Q5W13_13785 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA_22
Mor
Motif
Other DBs
NCBI-ProteinID:
WKX74862
LinkDB
All DBs
Position
complement(2877104..2878714)
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AA seq
536 aa
AA seq
DB search
MFEISDLKAKKLPELQEIAKGLNVPKFKTLKKLDLVYQILDVQAANPKVVAEVTAPKATE
PKPKPKPRPRKPRTVTEEKKPEVKAVVAPEKPVSKEQTAPAQQPTEIKKPRPRPVKREPK
SNPQHKNQNTPNGNNKNQRNQKPATYDKSNFDKDLKNRYKEPEFEFDSIIESEGVLDIMQ
DGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKTGDTVLGNVRPPKEGEKYFPLIKVNKI
NGIDPQIVRDRVSFEHLTPLFPDEKFNLAERQSNISTRIIDLFSPIGKGQRGMIVSQPKT
GKTMLLKDIANGIAANHPEVYQIILLIDERPEEVTDMQRNVQGEVIASTFDKEPSEHVRV
ANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALNKPKRFFG
AARNIEGGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKISNRRIFPAIDLTS
SSTRRDDLLLDKDTIQRMWILRKYLADMNPVEAMEFIEQRIKQTKNNDEFLLTMNQ
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcagatttaaaagcaaaaaaactgcctgaattgcaggaaattgccaaa
ggccttaatgtgccaaagttcaaaaccctaaaaaaactggaccttgtttatcaaatcttg
gatgtacaagcagccaaccccaaagttgtggcagaagtaactgcaccaaaagcaacagag
ccaaaacctaagccgaaaccaagacctaggaaaccaagaacggtaaccgaagaaaagaaa
cctgaagttaaggctgtagttgctcccgaaaaaccggtaagcaaagaacaaactgcacca
gcgcagcaaccaacagaaattaaaaaaccgcgcccaagacctgttaaaagagagcctaaa
agcaatcctcagcacaaaaaccagaatactcccaacgggaacaacaaaaatcagcgcaac
caaaagcctgctacctacgacaaaagtaattttgacaaggatttaaaaaatcgctacaag
gagcctgaatttgaatttgacagtattatagaaagcgaaggcgttcttgacattatgcaa
gacggttatggctttttacgttcttctgactacaactacctttcatctcctgatgatatt
tatgtatcacaatctcaaattagattatttggattgaaaactggagatactgttttagga
aacgtaagacctccaaaagaaggtgaaaaatatttccctcttattaaggtgaacaaaata
aacggaattgaccctcaaatagttcgggaccgtgtctcttttgaacacttaacacctttg
ttcccggatgaaaagttcaatttagccgaaagacagagtaatatttctacaagaattata
gatttattttctcctattggtaaaggacaaagaggtatgattgtttcccaacctaagacg
ggtaaaacaatgctattgaaggatatagcaaatggtattgcagccaatcatcctgaagtt
tatcaaattatacttttaatagatgaacgtccggaagaggttaccgacatgcaacgtaat
gttcaaggtgaagtaattgcttctacttttgataaagaaccttctgaacatgttcgtgtt
gcaaatattgtattagaaaaagcaaaaagattagtagaatgtggccatgatgttgttatt
ttattagactccatcacccgtttggcaagagcatacaacactgtacaaccagcttctggt
aaagtattaagtggtggtgtagacgctaatgcattaaacaagccaaaacgtttctttgga
gctgcccgtaacatagaaggcggcggatctctatctatcatagctactgcacttacagaa
actggttctaaaatggacgaagttatctttgaagagtttaaaggtacaggtaacatggaa
ttacagttagatcgtaaaatctctaacagaagaatattccctgctattgaccttacttca
tctagtacacgtagagatgatttattactggacaaggacacaatacaacgtatgtggatt
ttaagaaaatatttggcagatatgaatcctgttgaagctatggagttcattgaacaacgt
attaagcaaactaagaataacgatgaattcttgcttactatgaatcaataa
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