Zonotrichia leucophrys gambelii (white-crowned sparrow): 135441368
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Entry
135441368 CDS
T09958
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03015
mRNA surveillance pathway
zle04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135441368 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
135441368 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zle03021
]
135441368 (SYMPK)
03019 Messenger RNA biogenesis [BR:
zle03019
]
135441368 (SYMPK)
Transcription machinery [BR:
zle03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135441368 (SYMPK)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
135441368 (SYMPK)
U7-dependent histone pre-mRNA processing factors
135441368 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
SCD
Motif
Other DBs
NCBI-GeneID:
135441368
NCBI-ProteinID:
XP_064556991
LinkDB
All DBs
Position
Unknown
AA seq
1113 aa
AA seq
DB search
MLLKDENVNVVKKAILTMTQLYKVALQWMVKSKVISELQEACWEMMSSMASDIILLLDSD
NDGVRTHAIKFVEGLIVTLSPRTADSDVPKRHENDVSLERIPRDHPVIKYNTLWEEGKAA
LEQLLKFMVHPAISSINLTAALGSLATIARQRPMFMAEVIQAYETLHANLPPTLAKSQVS
SVRKNLKLHLLSVLRHPSSGDFQPQITTLLVDLGTPQAEIARSMPSPREARKRPRDEPDA
ALKKMKIEPPLGEDDEDKDLEAPAVAVAKVAGAVTVPSDTDITAEFLQPLLTPENVANLV
LISMVYLPEAMPASFQATYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKLLREE
PKEEKVAKPDAVVIKRRLSALGQGQAIAVLGAHGSAPGLPDEAPQAKRRPEPIMPATQPR
LAGAGGRKKVFRLSDVLKPLSEVQVEKLKLGAVRRILRSERAVAASGAAQARVKILASLV
TQFEVPLKGEVLSFILDDVRGRLDLAFAWLFQEYNAHLARGGGLERYDECLIGLLAGLQE
KPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLH
VLLDLSSHEKDKVRQQALQFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKD
TEVAAPWTEETIKQCLYLYLALLPHNHKLIHELASVYTEAIADIKRTVLRVIEQPIRGMG
MNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVL
NGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGDGTSAVSPLNPGELLIALHNIDSS
KCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQALTMYPRLGGF
VMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVVLQLPPPQLAAVFEKCPELREPL
LSHVRALTPHQQAHIPLSTMAILEATTRHEPEGTPGEEKPPKRPPGSEEDPKAKGGGPGS
PPPPEGAPPELLEPPPIFISAAEDEESSGGGGDASPPDPALDTPKDPPAGTEPPQLLPPP
GEAPPPSPPSSEPPPPGTQSPPLGGVPEGPSEG
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgctgctcaaggacgagaacgtcaacgtggtcaagaaagccatcctgaccatgacccag
ctctacaaggtggccctgcagtggatggtgaagtcgaaggtgatcagcgagctgcaggag
gcctgctgggagatgatgtcctccatggccagcgacatcatcctgctgctggactcggac
aacgacggcgtccgcacgcacgccatcaagttcgtggaggggctgatcgtgacgctgtcg
ccgcgcacggccgactcggacgtgcccaagcggcacgagaacgacgtcagcctggagcgc
atcccgcgcgaccaccccgtcatcaagtacaacactctgtgggaggagggcaaggcggcg
ctggagcagctgctcaagttcatggtgcacccggccatctccagcatcaacctgacggcg
gcgctgggctcgctggccaccatcgcccgccagcggcccatgttcatggccgaggtcatc
caggcctacgagaccctccatgccaacctgccgcccacgctggccaagtcgcaggtgagc
agcgtgcgcaagaacctgaagctgcacctgctcagcgtcctgcgccacccgtcctcgggc
gacttccagccgcagatcaccacgctgctggtggacctgggcacgccgcaggccgagatc
gcccgcagcatgcccagcccgcgcgaggcgcgcaagcggccccgcgacgagcccgacgcc
gccctcaagaagatgaagatcgagccacccctgggcgaggacgacgaggacaaggacctg
gaggcgccggcggtggccgtggccaaagtggccggagcggtcactgtcccctcggacacc
gacatcacggccgagttcctgcagccgctgctgacgcccgagaacgtggccaacctggtg
ctgatcagcatggtgtacctgcccgaggccatgcccgcctccttccaggccacctacacg
cccgtggagtcggcgggcaccgaggcgcagatcaagcacctggcgcggctcatggccacg
cagatgacggcggccggcctggggccaggcgtggagcagacgaagctgctgcgggaggag
cccaaggaggagaaggtggccaagccggacgcggtggtgatcaagcggcgcctgtcggcg
ctgggccagggccaggccatcgccgtgctgggcgcgcacggctccgcgcccgggctgccc
gacgaggcgccccaggccaagcgccggcccgagcccatcatgccggccacgcagccacgg
ctggcgggcgccggcggccgtaagaaggtgttccgcctcagcgacgtgctgaagccgctc
agcgaggtgcaggtggagaagctgaagctcggcgccgtgcgccgcatcctgcgctccgag
agggccgtggcggccagcggcgccgcacaggcccgagtgaagatcctggcctcgctggtg
acgcagttcgaggtgcccctcaagggcgaggtgctctccttcatcctggacgacgtgcgg
ggccgcctggacctggcgttcgcgtggctcttccaggagtacaacgcgcacctggcgcgc
ggcggcggcctggagcgctacgacgagtgcctgatcgggctgctggccgggctgcaggag
aaacccgaccagaaggacgggatcttcaccaaggtggtgctggaggcgccgctcatcacc
gagagcgccctggaagtgatccggaaatactgcgaggacgagagccgcacctacctgggc
atgtccaccctgcgggacctgatcttcaaacggccgtcgcggcagttccagtacctgcac
gtgctgctggacctcagctcgcacgagaaggacaaggtgcggcagcaggcgctgcagttc
atcaagcgcatgtacgagaaggagcagctccgcgagtacgtggagaagttcgccctcaat
tacctgcagctcctggtgcaccccaaccccccctccgtgctcttcggcgccgacaaggac
acagaggtggcagcgccctggaccgaggagaccatcaagcagtgcctgtacctgtacctg
gccctgctgccccacaaccacaagctgatccacgagctcgcctccgtctacaccgaggcc
atcgccgacatcaagcgcacggtgctgcgcgtcatcgagcagccgatccgcgggatgggg
atgaactccccggagctgctgctgctggtggagaattgccccaagggcgccgagacgctg
gtgacgcgctgcctgcacagcctgaccgacaaagtgccaccctcgcccgagctggtcaag
cgcgtgcgcgatctctaccacaagcggctgccggacgttcgcttcctcatccccgtcctc
aacgggctggagaagaaagaggtgattcaggcgctgcccaaactcatcaaactcaacccc
atcgtggtcaaggaggtgttcaaccgcctgctggggacgcagcacggtgacggcacctcg
gccgtgtcccccctgaaccccggggagctcctgatcgccctgcacaacatcgactcctcc
aagtgcgacatgaaatccatcatcaaagccaccaacctgtgctttgcggagcgcaacgtt
tacacctcggaggtgctggcggtggtgatgcagcagctgatggagcagagcccgctgccc
atgctgctgatgcgcacggtgatccaggccctgaccatgtacccccgcctggggggcttc
gtcatgaacatcctgtcccggctcatcatgaaacaggtgtggaagtaccccaaggtgtgg
gaagggttcatcaagtgctgccagcgcaccaagccgcagtccttccaggtggttctgcag
ctgcccccgccccagctcgccgccgtcttcgagaaatgcccggagctgcgggagcccctg
ctgagccacgtgcgcgccctcaccccgcaccagcaagcgcacatccccctgtccaccatg
gccatcctggaggccaccacgcgccacgagcccgaggggacacctggagaggagaagccc
cccaagcgccccccgggctccgaggaagaccccaaggccaagggggggggtcccggctcc
cctcccccccccgagggagcccccccggagctgctggagccccccccgatcttcatcagc
gccgccgaggatgaggagagctcgggggggggaggggacgcgtcccccccggaccccgcc
ctggacacgcccaaggacccccccgcgggcacggagcccccccagctcctcccccctccc
ggcgaggccccgccccccagccccccctcgtcggagccgcccccccccggcacccagagc
ccccctctgggcggggtccccgagggcccctccgagggctga
DBGET
integrated database retrieval system
