Zonotrichia leucophrys gambelii (white-crowned sparrow): 135441417
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Entry
135441417 CDS
T09958
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135441417 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135441417 (SKIC2)
Enzymes [BR:
zle01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135441417 (SKIC2)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135441417 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
135441417 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Ski2_N
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
MTR4_beta-barrel
AAA_16
Motif
Other DBs
NCBI-GeneID:
135441417
NCBI-ProteinID:
XP_064557033
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MAGMEMERIALPPRGPRELPLALLELGSSGRFELLTGEPGDAEGPEHRSTLPQGLPPWAP
PPLWAELERKFLGTPEGLPLHRHQRARRAWLRTPDPRALFALDPTPVGGGLRAERDPRTG
ALLGFSEELLPSAGLSPSSSPSLLRPPGEGLRVGGGLTSVPFWPGGQDEPTLDQLRAPRN
EEEEEDVDFDTDLLTTPPGLKRGVEFKPQGFGEGALSLSGLLETLDTLELGGGGDPQLGT
PPKSPQSPPHNQFGEGSHPEPPPRRCDSLEELLAKEEVGTPPAPPPEPPEELWAELVDAT
TPVQGFEELLPDPAHKWPFTPDPFQQRAALCLERGHSVLVAAHTSAGKTAVAEYAIALAR
RHMTRSIYTSPIKALSNQKFRDFRETFGDVGLLTGDAQLRPEAACLVMTTEILRSMLYNG
SDTIRDLEWVIFDEVHYVNDDERGVVWEEVLILLPEHVKLVLLSATVPNALEFAQWVGRT
KRRCVRVLSTPRRPVPLEHFLFTGNSSRTRHQLFQLLGPSGAFSTQGYYAAVEAKKEQSS
KHAQSFGARQPTLGGSNPGQERGVWLSLLETLRERELLPAVTFTFSRGRCEDQAAALGSL
DLLGGPEKAQVRQFLTRCLARLRGSDRRLPQVLQLSDLLQRGIGVHHGGVLPLLKEIVEM
LFSQGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGSSFRDLLPGEYTQMSGRAGRRGL
DATGTVIILCKGPVPELSDLHRMMLGRPSPLQSRFRLTYPMILLLLRAPALRPHDLMRRS
FAEFPLRRDATAQTRRVAALREALAALGDPEGTPGDNGGDNGGDIGDLPQYYRAVVALRR
ARSVLQRCLAQPGGQRVLTPGRVVVVSTPKHRNALGLVLQVSSGGSGRTFTTLVLSEKPP
ENGGAPPEPPQDVPYPEELLLSRLFLPEGPPGPCLEQLRPEDIVGVTAKTLRVNPEILLQ
ELRPPRGPRPRTPSTRPGRSCWSSWRSCSSSCRTSPCCCCPSTTSASRCCRSWVTCRGAQ
WRWAAAWRRC
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcggggatggagatggagaggatcgcgctgccgccccgcgggccccgggagctgccg
ctggcgctgctggagttgggaagctccgggaggttcgagctcctgaccggagaaccgggg
gatgcggaggggcccgagcaccgcagcaccctccctcagggtctccccccctgggccccg
ccccctttgtgggcggagcttgagcggaaattcctggggacccccgaggggctccccctg
caccggcaccagcgggcccggagggcgtggctgaggaccccagacccacgagctctcttt
gccctggaccccacccccgtgggcggggggcttcgggctgagcgagacccccggacgggc
gccctgctggggttcagcgaggagctgctcccctccgcgggtctctccccctcctcctcc
ccgtccctgctgcgccccccgggcgaggggctcagggtgggcgggggtctcaccagcgtc
cccttctggccaggcgggcaggacgagcccaccctggatcagctccgagccccccgaaat
gaggaggaggaggaggacgtggacttcgacacagatttgctgacgacccccccagggctg
aaacggggggtggagttcaaaccccaaggttttggggagggggctctgtccctgtccggc
ctcttggagaccctcgacactttggaattggggggggggggcgacccccagcttgggacc
ccccccaaatccccccagagccccccccataatcaatttggggaggggtctcaccccgag
ccccccccccgccgttgtgacagcctggaggagctgctggccaaggaggaggtggggacc
cccccagcgccgccccccgagccccccgaggagctttgggctgagctggtcgatgccacc
acccccgtgcagggctttgaggagctgctgcctgaccctgcacacaagtggccgttcacc
ccggaccccttccaacaacgcgccgccctgtgcctggagcgcggtcactcggtcctggtg
gccgctcacacctcggccggcaaaacggccgtggccgagtacgccatcgcgctggcccgg
cgccacatgacccggtccatctacacctctcccatcaaggccctttcgaaccagaaattc
cgggattttcgggaaaccttcggcgacgtggggctgctgacgggggacgcgcagctgcgg
cccgaggccgcctgcctggtcatgaccaccgagatcctgcggtcgatgctgtacaatggc
tccgacaccatccgggacctggagtgggtgatcttcgatgaggtgcactacgtcaatgac
gatgagaggggcgtggtgtgggaggaggtgctgatcctgctgcccgagcacgtcaagctg
gttctgctcagcgccaccgtccccaacgcgctcgagttcgcccagtgggtcggccgcacc
aagcgccgctgtgtccgcgttctgagcaccccgcgccgcccggtgccgctggagcatttc
ctgttcaccgggaacagctcccgcacccggcaccagctcttccagctgctgggccccagc
ggggccttcagcacccaggggtactacgcagccgtggaggccaagaaggagcagagcagc
aaacacgcccagagcttcggggcacggcagcccaccctggggggctccaaccccgggcag
gagcgaggggtctggctgtccctgctggagacgctccgggagcgggagctgctgccggcc
gtcaccttcaccttctcgcggggccgctgcgaggaccaggccgcggctctgggctcgctg
gatctgctcggaggccccgagaaggcccaggtgcggcagttcctgacgcgctgcctggcc
cggctgcgcggctccgaccgccgcctgccgcaggtgctgcagctctcggacctgctgcag
cgcggcatcggcgtccaccatggcggggtgctgcccctgctcaaggagatcgtggagatg
ctcttcagccaggggctggtcaaggtgctgtttgccaccgagacgttcgccatgggggtg
aacatgccggcgcggaccgtggtgttcgactccatccgcaaacacgacgggagcagcttc
cgtgacctcctgccaggcgagtacacgcagatgtcggggcgagccgggcgccgcgggctg
gacgccaccggcaccgtcatcatcctctgcaagggcccggtgcccgagctgtccgacctg
caccgcatgatgctgggccgcccgtcgccgctgcagtcgcggttccgcctgacgtacccc
atgatcctgctgctgctgcgcgcgcccgccctgcgcccccacgacctcatgcgccgcagc
ttcgccgagttcccgctgcgccgcgacgccacggcccagacccggcgcgtggccgccctc
agggaggcgctggcggcacttggggaccccgaggggacacctggggacaacggaggtgac
aacggaggtgacatcggggacctgccccagtactaccgggccgtggtggcgctgcgccga
gcccgctccgtgctacagcggtgcctggcgcagccgggggggcagcgagtgctgacaccg
ggccgggtggtggtggtgagcaccccgaaacaccgcaacgcgctggggctggtgctgcag
gtgagctcggggggctcgggccgcaccttcaccacgctggtgctcagcgagaagcccccc
gaaaatgggggagcccccccggagcccccccaggacgtgccctaccccgaggagctgctg
ctcagccgcctcttcctgcccgagggcccccccgggccctgcctggagcagctgcgcccc
gaggacatcgtgggggtcacggccaagaccctcagggtgaaccccgaaattctgctgcag
gagctgcgcccccccaggggaccccgaccccgtactcccagtacgcggccaggcaggagc
tgctggagcagctggaggagctgcagttccagctgtcggaccagtccctgctgctgctgc
ccgagtaccaccagcgcctcgaggtgctgtcggagctgggttacgtgtcggggggcgcag
tggcgctgggcggccgcgtggcggcgctgctga
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integrated database retrieval system
