Zonotrichia leucophrys gambelii (white-crowned sparrow): 135441445
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Entry
135441445 CDS
T09958
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135441445 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135441445 (XAB2)
03041 Spliceosome [BR:
zle03041
]
135441445 (XAB2)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135441445 (XAB2)
Spliceosome [BR:
zle03041
]
Complex B
Other components
Prp19-related factors
135441445 (XAB2)
Complex C
135441445 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
TPR_14
HAT_PRP39_C
TPR_19
Suf
TPR_2
TPR_12
TPR_15
TPR_8
TPR_16
TPR_7
PPR
TPR_18
TPR_1
TPR_9
RPN7
Motif
Other DBs
NCBI-GeneID:
135441445
NCBI-ProteinID:
XP_064557062
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MAAAEAAMAAREEPPGTGAGAGPGPEQQQPGAMEEPGAMEEPGAMEGAGPAGEAGPAAVT
DPGAGPGPERPELCFEEEEVQHEEELLRNPFSVRGWLRYAQARQRGPRPRLNQIYERALR
ELPGSYKLWYQYLRQRRAQVKGRCPSDPAFEEANAVHERALVFMHKMPRIWLDYCQFLAE
QGRITRTRRTFDRALRALPITQHRRLWPPYLSFVRRHPLPETAVRVFRRFLKLCPEEAEQ
YVSYLRSVGRLDEAAQVLARLVNDERFVSRQGKSNYQLWQELCELLSQHPDRVRSLDAGG
IIRGGLTRFTDQRGRLWGALADCYVRCGHLEKARDVYEEAVQTVMTVRDFTQVFDSYARF
EESVIAALLDTQAQLGQGQDGERDPKNGPFFPQKATALPSRRAEYFDSSEPVQNRLYKNL
RVWAMLADLEESLGTFQSTRSVYERILDLRIATPQIVINYALLLEEHGRFEDSFKAYERG
IALFRWPHVGDLWLTYLSKFVARYGGRKLERARDLFEQALDGCPPQHAKTIYLLYARLEE
QFGLARRAMAVYERGTRAVPPEQQRDMFHIYIRRAAELFGVTHTRPIYQRAIEVGTWAHL
GTPG
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctgaggcggcgatggcggcgcgggaggagccgccgggaacgggagcggga
gcggggccgggcccggagcagcagcagccgggagccatggaggaaccgggagccatggag
gaaccgggagccatggagggagcggggccggcgggggaagcggggcccgccgcggtgacg
gatcccggagcggggccgggcccggagcggcccgagctgtgctttgaggaggaggaggtg
cagcacgaggaggagctgctccggaacccgttctcggtgcggggctggctccgttacgcg
caggcccggcagcgcgggccccgcccccgcctcaaccagatctacgagagagccctgagg
gagctgcccggcagttacaagctgtggtatcagtacctgcggcagcgccgggcccaggtc
aaaggtcgctgtccctctgaccccgccttcgaggaggccaacgctgtgcacgagagagcg
ctggtgttcatgcacaagatgccgcggatctggctggattactgccagttcctggccgag
cagggccggatcacgcggacgcgccggacgtttgaccgggcgctgcgggcactgcccatc
acgcagcaccggcgcctctggccgccctacctgagcttcgtgcggcgccaccccctgccc
gagaccgctgtgcgcgtcttcaggcggttcctcaagctgtgccccgaggaggcagagcag
tacgtgtcgtacctgcgctccgtgggccgcctggacgaggccgcgcaggttctggcccgg
ctggtgaacgatgagcgcttcgtgtcccgccagggcaagtccaactaccagctctggcag
gagctctgtgagctgctgtcccagcaccccgaccgcgtgcgctcgctggacgccgggggc
atcatccggggggggctcacgcgcttcaccgaccagcggggccggctctggggggcgctg
gccgactgctacgtgcgctgcgggcacctggagaaggcccgggatgtgtacgaggaggcc
gtgcagacggtgatgacggtgcgcgatttcacgcaggtgttcgacagctacgcgcgcttc
gaggagagcgtgatcgccgccctgctggacacgcaggcgcagctggggcagggccaggac
ggtgagagggaccccaaaaacggcccgtttttcccccagaaagccacggcgctcccctcc
cgccgggccgagtacttcgacagctcggagccggtgcagaaccggctctacaaaaacctg
agggtgtgggcgatgctggcagacctggaggagagcctgggcaccttccagtccacccgc
agtgtgtacgagcgcatcctggacctgcgcatcgccaccccccagatcgtcatcaactac
gcgctgctgctggaggagcacgggcgcttcgaggacagcttcaaggcgtacgagcgcggc
atcgcgctgttccgctggccgcacgtcggggacctgtggctcacgtacctgtccaagttc
gtggcccggtacggcggccgcaagctggagcgcgcccgggacctcttcgagcaggcgctg
gacgggtgccccccccagcacgccaagaccatctacctgctgtacgcccgcctggaggag
cagtttgggctggcccggcgcgccatggccgtgtacgagcggggcacgcgggcggtgccg
cccgagcagcagcgcgacatgttccacatctacatccggcgggcggccgagctcttcggg
gtcacccacacgcgccccatctaccagcgggccatcgaggtgggcacctgggcacacctg
ggtacacctggg
DBGET
integrated database retrieval system
