KEGG   Zonotrichia leucophrys gambelii (white-crowned sparrow): 135441878
Entry
135441878         CDS       T09958                                 
Name
(RefSeq) DNA repair protein XRCC1-like
  KO
K10803  DNA-repair protein XRCC1
Organism
zle  Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:zle00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    135441878
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:zle03400]
    135441878
DNA repair and recombination proteins [BR:zle03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     135441878
SSDB
Motif
Pfam: XRCC1_N BRCT PTCB-BRCT BRCT_2 LIG3_BRCT
Other DBs
NCBI-GeneID: 135441878
NCBI-ProteinID: XP_064557504
LinkDB
Position
Unknown
AA seq 643 aa
MAEIPFTRVVSVTSADPRHPAENLLRPDDGGKWRGATAGEKQLSVVLELGDTRPIHSLHI
GNDGAAFVEVLLGCSAGGEFQVLLPSSALMSPSESRAGAGPGRVRLFGPQSLVKRPATPT
AATPTARYDRLQVVLSQPYCQSRPYGLAFIRAFAAPEEGEEPPPAPVRRLGAFTLREEGE
GSPRRPPGALFYQRPSPTAGPAQPPPGPSYAAAALQETERDGNGQPPKRRLPSPTTTTNG
TPQKKPKIPQKSPQKNPPKKSETSTKNPENPKKNSGTSQKNSGPPQKNSENPQKNSGTLQ
KYLENPKKNSGAQQKNVENSQKNSENSQKNSENSQKNSENSQKNSENSQKNSENSQKNSG
NSQKNSGVPNVGGGPILGGVVLALSGFQNPLRGHLRSAATAMGAEYRPDWTPECTHLVCA
FPRTPKAARARQQGGVVVGARWIWECQKRGRRLSCGPYLLDGSASSGSEGEEPEEAPPPP
RPSPKGKKGAGPPQMDKPETPPPVAPATPPESGDSEDQSEDTDPFGGTTEENSEDEEEGE
GLPIPPLPDFFEDKKFFLHGEFPEGEGRRLRRLVVAFGGSLAPYMDESVTHVVTSQDWDP
AFEEALELRPSLLFVRPHWLLLCGERQRPIPAQPYLVTSSARQ
NT seq 1932 nt   +upstreamnt  +downstreamnt
atggcggagattccgttcacgcgggtggtgtcggtgaccagcgcggatccgcgtcacccg
gcggagaatctgctgaggcccgacgatggcgggaaatggagaggagcgacggcgggggag
aaacagctgagtgtggtgctggagctgggcgacaccaggcccatccattccctgcacatc
ggcaacgacggcgccgccttcgtggaggtgctgctgggctgctctgccgggggagagttc
caggtgctcctccccagctcagctctgatgtcacccagcgagagccgggcgggggcgggg
ccaggccgggtgcggctctttgggcctcagtcattggtcaaacgcccggccacgcccacc
gcggccacgcccacggccaggtacgaccgactgcaggtggtgctgagccagccctactgc
cagagccgcccctatggcctggcgttcatcagagccttcgctgcccctgaggagggtgag
gaaccgcccccggcaccggttcgccgcctgggcgcgttcacgctgcgcgaggagggggag
gggagcccccgccgcccccccggggcgctgttctaccaacgcccctcccccaccgcaggc
cccgcccagcccccgcctgggcccagctacgctgcagccgctctgcaggagacggagagg
gatggaaatggacagccccccaagcgccgcctcccctcccccaccaccaccaccaacggg
accccccaaaaaaagcccaaaataccccaaaaatccccccaaaaaaaccctccaaaaaaa
tcagaaacctccacaaaaaatccggaaaaccccaaaaaaaattcaggaacctcccaaaaa
aattcgggaccccctcagaaaaattccgaaaacccccagaaaaattcaggaacgctccaa
aaatatttggaaaaccccaaaaaaaattcgggagcccaacaaaaaaacgtggaaaattcc
caaaaaaattcagaaaattcacaaaaaaattcggaaaattcccaaaaaaattcagaaaat
tcacaaaaaaattcagaaaattcccaaaaaaattcagaaaattcccaaaaaaattcggga
aattcccaaaaaaattcgggggtccccaatgtgggcgggggtcccattttggggggggtg
gtgctggcgctgagcggtttccagaaccctctacggggtcacctgaggtcagcggccacg
gccatgggggcggagtatcggccggactggacacctgagtgcacccacctggtgtgcgcc
ttccccaggaccccgaaggcggcgcgggcgcggcagcagggcggggtcgtggtgggggcc
aggtggatctgggagtgccagaaacggggccggaggctgagctgcgggccgtacctcctg
gatggctccgcctcctccggcagcgagggggaggagcctgaggaggccccgccccctcca
cgcccctcccctaaggggaaaaaaggggcggggcctcctcagatggacaaacccgagact
cctccccctgtggcgccggccacgccccctgagtcaggtgacagcgaggaccaatcagag
gacaccgacccttttggcggcaccaccgaggagaacagcgaggatgaggaggagggggag
gggctgcccatcccccccctgcccgatttttttgaggacaaaaagttctttttgcacgga
gaattcccggagggggaggggcggcggctgcggcgcctcgtggtggcctttgggggctcc
ctcgctccctacatggacgaatccgtgacccacgtggtgacgtcacaggactgggacccc
gccttcgaggaggcgctggagctccgcccctcgctgctgttcgtgcgtccccattggctg
ctgctctgcggggagcggcagcggccaatcccggcccagccctacctggtgacgtcatcg
gcgcggcagtga

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