Zonotrichia leucophrys gambelii (white-crowned sparrow): 135442579
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Entry
135442579 CDS
T09958
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zle03016
]
135442579 (RTCB)
Enzymes [BR:
zle01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
135442579 (RTCB)
Transfer RNA biogenesis [BR:
zle03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135442579 (RTCB)
Prokaryotic type
tRNA splicing ligases
135442579 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
135442579
NCBI-ProteinID:
XP_064558576
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All DBs
Position
1A:41538864..41549701
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcgtgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaatgcctgccgcggcggaggtgcgggt
ggcttcctgcctgctatgaaacagattgggaatgtggctgcattgcctggcattgttcac
agatcaataggccttccagatgtccattctggctatggatttgctattggcaacatggct
gcctttgatatgagtgatcctgaagcagtggtttcaccaggtggtgtcggctttgacatc
aactgtggcgtccgcttgctgcggacaaatttggacgaaagcgatgtgcagcctgtgaaa
gaacagctcgcccaggctatgtttgaccacattcctgttggtgttggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcgctggagatgggtgtggactggtctctc
cgagagggctacgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgcta
caggctgaccccaacaaagtctcttcaagggcaaagaaaaggggcctgcctcagctgggc
accctgggagctggaaatcattacgctgagatccaggtggtggatgagatttacaacgaa
tacgctgccaagaaaatgggcattgaccacaaagggcaggtgtgcgtgatgatccacagt
ggaagcagagggctgggccaccaggttgccacagatgcactggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaatgatcggcagctggcgtgtgccaggattgcctct
gcagagggacaggattacctgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttccatgactttcctaacacgacaggcttttgccaaagtgttcaacacaacccca
gatgaccttgacatgcacgttatctatgatgtgtctcacaacattgccaaggtggaacag
catgtggtggatggaaaggagcggactctgctggtgcacagaaagggatcaaccagggcc
ttcccccctcaccatcctcttattgctgttgattatcaactgactggacagcctgttttg
atcggtggcacaatgggcacctgcagctatgtcctcactggcacagagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggacgtactggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgactgat
gtggttaacacctgccatgaagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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