Zonotrichia leucophrys gambelii (white-crowned sparrow): 135442616
Help
Entry
135442616 CDS
T09958
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zle04121
]
135442616 (PDZRN4)
Enzymes [BR:
zle01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135442616 (PDZRN4)
Ubiquitin system [BR:
zle04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
135442616 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_4
zf-RING_5
zf-C3HC4_3
zf-rbx1
PDZ_Tricorn
TRAF3_RING
Prok-RING_4
IBR_1
Motif
Other DBs
NCBI-GeneID:
135442616
NCBI-ProteinID:
XP_064558658
LinkDB
All DBs
Position
1A:complement(43848575..44076435)
Genome browser
AA seq
1031 aa
AA seq
DB search
MGFDPSRFAGPVAAELQCGLCGRVLEEPLSTPCGHVFCAGCLLPWAARRRRCPLRCRPLA
AAELRPVLPLRSLVQELEVKCDYSPRGCGSTVRLRELPAHLAACRYGPPGPAEPQPPAGL
PSGRSPGSAAGQPRAGGHRCLRALRGGGAPEPGQELKREALRWSRREKSLLAQLSALQSE
VQLTARRYQAKFGQYMSHISSIARDLAGGQPGKGGVRKPLMIMLHRENDTLGFNIIGGRP
NQNNQEESAEGIYVSKILENGPADKAEGLQIHDRIIEVNGKDLSKATHEEAVEAFRNAKE
PIVVQVLRRAPAAKAHSGSQDVRLMDASTQTDITFEHIMALAKLRPSTPPVPDICPFLLS
DSCHSLHPVEHEFYEGNEYLSSLPADADRAEDFEYEEVELCRIGSQEKLGLTVCYRTDDE
EDTGIYVSEVDPNSIAARDGRIREGDRILQINGQDVQNREEAVALLSSEECRKIVLLVAR
PEMQLEEGWLDDERNEFLEELNLEMLEEQHNEAMQYTANEVEQPKKHEEEDGTTDTATSS
SNNHEKDSGVGPTDESLRNDESSEQENAAEEQNGATLQGKRDLGHSQDTLGSVELQCNES
FVSGEYIESDFIGNPEEECERFRQLLELKCKIRNHGEYDLYYSSSMIECNRRDQDGVEHE
LQLLNEELRNIELECQNIMQAHRLQKVRDQYGDIWSLHDESFRNYNTSTDVQRGKLDDIM
EHPEKSDKDSSSAYNTAESCRSTPLTVERSPDNSLQRVISITNRKNLRTTIVANQSSSGQ
SNRETTSAKTKPTEQNSAAENAVLASESSKFTDQDRQGSEHIPYLSPYHSSSYRYGNIPA
HAKHYQSYMQLIQQKSAVEYAQSQLSLVSMCKDSQKCAEPKMEWKVKIRSDGTRYITKRP
VRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMR
SRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTR
VHNAFLSVTTV
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgacccgtcgcggttcgcggggccggtggcggcggagctgcagtgcgggctg
tgcgggcgggtgctggaggagccgctgtccactccgtgcgggcacgtcttctgcgccggc
tgcctgctgccctgggcggcgcggcgccgccgctgcccgctgcgctgccggccgctggcg
gccgccgagctgcgccccgtcctgcccctccgcagcctcgtccaggagctagaggtcaag
tgcgactacagcccgcggggctgcggcagcaccgtgcggctgcgggagctgcccgcgcac
ctggcggcgtgccgctacggcccgcccggccccgccgagccgcagccccctgccgggctc
ccctcgggccgctcgccgggcagcgcggcggggcagccgcgggcgggcgggcaccgctgc
ctgcgggcgctgcggggtggcggcgccccggagccggggcaggagctgaagagggaggcc
ctgcgctggagcaggagggagaagtcgctgctggcgcagctgtcggcgctgcagagcgag
gtgcagctgacggcgcggcggtaccaggccaagttcggccagtacatgagccacatcagc
agcatcgcccgggacctggcgggcggccagcccggcaagggaggagtccgcaaaccactc
atgatcatgctacaccgagaaaatgacactttgggcttcaatattataggaggacgaccc
aatcagaacaaccaggaggaatctgctgagggaatttatgtgtcaaagattttggaaaat
ggacctgcagacaaagcagaaggcctgcaaattcatgacaggattattgaggtcaatggg
aaggacctgtccaaggccactcacgaggaggccgtggaagctttccgcaatgccaaggag
cccatcgtggttcaggtgctacgacgagccccagctgccaaggctcacagtggctctcag
gatgttcggctcatggatgccagcactcagactgacatcacttttgagcacatcatggct
ctggccaagctaaggccttccacaccaccagttccagatatctgcccttttctcctttca
gatagctgccattctcttcacccagtggagcatgaattttatgaaggcaatgagtatctt
tccagcctgcctgctgatgcagatagagcagaggactttgagtatgaggaggtggagctg
tgccgcattggcagccaggagaagctggggctgactgtctgctacagaaccgatgatgag
gaggacacgggaatctatgtcagtgaggttgatccaaacagcattgctgccagagatgga
cggatccgtgaaggagaccgcattttgcaaataaatggccaagatgtccagaatagggaa
gaggcagtggcgttgctctccagcgaagaatgcaggaaaattgtgttgctggtggcgagg
ccggagatgcagctggaggaagggtggctggatgatgaaaggaatgaattcttagaggag
ttaaacttggaaatgttggaagagcagcataatgaagcgatgcagtacacagccaatgag
gtggagcagccaaagaaacatgaagaggaagatggcactacagacactgcaacgtcatca
tccaacaatcatgagaaggacagtggggtgggacctacagatgaaagtcttcgcaacgat
gagagctcagagcaagaaaatgcagctgaggagcagaacggtgctaccctgcagggcaaa
cgggatctgggccacagccaggacactttaggcagtgttgagctccagtgcaatgaaagc
tttgtgtctggggaatacattgaatctgatttcataggaaacccagaggaggaatgtgaa
aggtttcgacagctgttggaactgaagtgcaagattcgaaaccatggagagtatgatctt
tattactcaagcagcatgatagaatgcaacagaagagaccaagatggagtggagcatgag
ctgcagctactcaatgaggaactgaggaacattgaacttgaatgccagaacattatgcaa
gctcaccggctccaaaaggtgagagaccagtatggagacatttggtctttacatgatgaa
agtttcaggaattataacaccagcacagatgtacaaagaggcaaactggatgacatcatg
gagcaccctgagaagtctgacaaggacagctccagtgcctacaacactgctgaaagctgc
aggagcactccactgactgtggagcgatccccggataactctctccagagggtaatcagc
ataaccaacaggaaaaacctgaggaccacaattgttgctaatcagtcatcctcaggacaa
agcaacagggagacaacttcagccaaaaccaaacccactgagcaaaacagtgctgctgag
aatgcagtgctggcatcagaaagcagcaaattcacagaccaggacaggcaaggcagcgag
cacattccctatttgtctccatatcacagttcttcttacaggtacgggaacatccctgcc
catgcaaagcattatcagagctatatgcagctgatccagcagaagtctgctgtggagtat
gcccagagccagctcagcctggtgagcatgtgcaaagattcgcagaagtgcgcggagccc
aagatggaatggaaagtgaaaataagaagtgatgggacgaggtacatcacaaagagacca
gttcgagacagaatcctgaaggaacgtgccttaaaaattaaagaggagcgcagtgggatg
acgacagatgatgacacgatgagcgagatgaagatgggtcgctactggagcaaagaggag
cggaagcagcatttggtgcgtgccaaggagcagaggaggcggcgggagttcatgatgagg
agcaggctggagtgtctcaaggaaagtccacagagtggcagcgagggcaaaaaagaaatc
aacattattgaactgagtcacaaaaagatgatgaaaaagagaaacaagaaaatcttggac
aactggatgacaatacaagaactgatgacacatggtgctaaatccccagacggcacaaga
gtgcacaatgcctttttatcagttactactgtatga
DBGET
integrated database retrieval system
