Zonotrichia leucophrys gambelii (white-crowned sparrow): 135443486
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Entry
135443486 CDS
T09958
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
135443486 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zle03021
]
135443486 (SMARCC1)
03036 Chromosome and associated proteins [BR:
zle03036
]
135443486 (SMARCC1)
Transcription machinery [BR:
zle03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
135443486 (SMARCC1)
Chromosome and associated proteins [BR:
zle03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
135443486 (SMARCC1)
PBAF complex
135443486 (SMARCC1)
GBAF(ncBAF) complex
135443486 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
SWIRM-assoc_2
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
135443486
NCBI-ProteinID:
XP_064559790
LinkDB
All DBs
Position
2:complement(629017..700346)
Genome browser
AA seq
984 aa
AA seq
DB search
MDFKAGGTLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNCLSRPT
IYLIPDMELKLANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSVDDDEWLRPVMKKDKQV
LVHWGFFPDSYDTWVHASEIEAEIEDAPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDE
NRKSVSFRQRISMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKKTGKKGQAA
LYGKRRGQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDE
QDEETVATGGKEDEDPNKGDQSRSLDTGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRA
LPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLE
QWGLINYQVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQVPAAQQMLSFPEKNK
EKPTDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVG
SRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRV
ASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPEEP
EKMDGAEEEKMETEAEGQPAEKVESKAESEPEEGEKVPEGESERSVDKEPEGEGAAEPKT
EEKEAEENKENVDGSKDKEAEAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEER
KIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYA
ELRARQQMEQQHSQNPQQPHQQHPSGPGITPLGAPAHPGLLPHQQPPPYPMMHHQMPPPH
PPQPGQLPGSLLPGQPLPGRMIPASIHGGGGAAPPGMAPMAGNLLGPRVPLAAPNGMYPG
PAPPPPAEGVTPPPAGAPPASAAP
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaaagctggaggtacattatgtcacattcttggtgctgcttacaaatataag
aatgaacagggctggaggaggtttgacctgcagaatccctcgcggatggaccggaacgtg
gagatgttcatgaccattgagaaaacactggtgcagaacaactgtctgagcagaccaacc
atctacctcattcctgacatggagctgaagctggccaacaagctgaaggacattgtcaag
cgtcaccagggaacagtcactgaagagaaatccaaggccacccaccacgtgtatccaagt
cctacctcagtggatgatgatgagtggttgagacctgtgatgaaaaaggacaagcaggtg
ctggtgcattggggctttttcccagacagctacgacacctgggtccatgccagcgagatc
gaggcggaaatcgaggatgctcccatccctgagaaaccctggaaggtccatgccaagtgg
attctggacacggatgtgttcaatgagtggatgaatgaggaggattatgaggtggatgag
aacaggaaatccgtcagcttccgccagaggatctccatgaagaacgaggagcccgtgagg
agccccgagaggagggacaggaaagctgcagccagcacaaggaagaggaaacactcccct
tctccacctcccactcctgtggagtccaggaaaaagacagggaagaaagggcaagcagct
ctctatggcaagaggagggggcagaaggaggaggatgagcaggaggatctcaccaaggac
atggaggatcccaccccagtgcccaacatagaggaagtggtacttcccaaaaatgtgaac
ccaaagaaggacagtgagaacacgcccgtcaaaggaggaaccgtggcagacctggatgag
caggatgaggagacagtggcgactggaggaaaggaggacgaggaccccaacaagggtgac
cagagccgctctctggacacgggggaggacaatgtcaccgagcagaccaaccacatcatc
atccccagctacgcctcctggttcgactacaactgcatccacgtcattgaacgtcgagcg
cttccagaattcttcaacgggaaaaacaagtccaagactccagaaatatacctggcctac
aggaacttcatgatcgacacgtaccggctgaacccgcaggagtacctgaccagcactgcc
tgcaggaggaacctcaccggggatgtctgtgctgtcatgagggtccacgccttcctggag
cagtgggggctcatcaactaccaggtggaccccgagagccgccccatggccatggggccc
cccccgaccccccacttcaacgtgctggccgacaccccctcggggctgatgccgctgcac
atccgcaccccgcaggttccagctgcccagcagatgctgagcttccctgagaaaaacaag
gagaagccaactgacctgcagaactttggccttcgcactgacatctactccaaaaagact
ctggccaagagtaaaggtgcaagtgctggcagagaatggacagagcaggagacactgctg
ctgttggaggccctggagatgtacaaggacgactggaacaaggtgtcggagcacgtgggc
agccgcacgcaggacgagtgcatcctgcacttcctgcgcctgcccatcgaggatccctac
ctggagaactcggacgcctccctgggccccctggcctaccagcccgtgcccttcagccag
tctgggaaccccgtcatgagcaccgtggccttcctggcctctgtggtggatccgcgcgtg
gcctcggccgctgccaaggctgccctcgaggagttctcccgggtcagagaggaggtgccc
ctggagctggtggaggcccacgtgaagaaggtgcaggaagcagctcgagcctctgggaag
gtggatcccacctacgggctggagagcagctgcatcgctggcacaggccctgaggagcct
gagaagatggatggagctgaggaggagaagatggaaacggaggcagaggggcagccagca
gaaaaggtggagagcaaagccgagagcgagcccgaggaaggggagaaggttccggaaggg
gagagcgagcggagcgtggacaaggagcccgagggcgagggggctgcggagcccaagaca
gaggaaaaggaggcagaggagaacaaggagaacgttgatggcagcaaggacaaagaggct
gaggctggcaagaagaaagtggagcacgagatctcggaaggaaacgtggccacagctgca
gctgctgccctggcctctgctgccaccaaagccaagcacctggcagctgtggaggagagg
aagatcaagtccctggtggccctgctggtggagactcagatgaagaagctggagataaag
cttcgccactttgaggagctggaaaccatcatggaccgggagaaggaggcactggagcag
cagaggcagcagctgctgactgagaggcagaacttccacatggagcagctcaagtacgcc
gagctgagggctcgccagcaaatggagcagcagcacagccagaacccccagcagccccac
cagcagcaccccagcgggcctggcatcacccccctgggggcaccagcacacccagggctg
ctgccccaccagcagcccccaccctaccccatgatgcaccaccagatgccacctcctcac
ccacctcagccaggccagctgcccggctccctgctgccgggccagcccctgccgggccgc
atgatccctgccagcatccacggcggcggcggggccgccccgcccggcatggccccgatg
gccgggaacctgctggggccgagagtgccgctggccgcccccaacggaatgtaccccggc
ccggcgccgccgccccccgccgaaggagtgacgccgcccccggccggggccccgcccgcc
tcagccgccccctaa
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