Zonotrichia leucophrys gambelii (white-crowned sparrow): 135443582
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Entry
135443582 CDS
T09958
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
135443582 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
zle01002
]
135443582 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zle00536
]
135443582 (SHH)
Peptidases and inhibitors [BR:
zle01002
]
Cysteine peptidases
Family C46: hedgehog family
135443582 (SHH)
Glycosaminoglycan binding proteins [BR:
zle00536
]
Heparan sulfate / Heparin
Morphogens
135443582 (SHH)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Ribosomal_S6e
Vint
Motif
Other DBs
NCBI-GeneID:
135443582
NCBI-ProteinID:
XP_064559968
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Position
2:complement(9062470..9077057)
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AA seq
425 aa
AA seq
DB search
MDEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEKGGTKLVKDLRPGDRVLVADTEGRLLYSD
FLTFLDREDGSHKLFYVIETRQPRAQLLLTAAHLLFVAPQQNQSEAGSTGGRALFASRVR
PGQRVFVLGEGGRRLLPAAVHRVSLREEASGAYAPLTAQGTILIDRVLASCYAVIEEHSW
AHWAFAPFRLLQALLAALCPAGMGCPMGDPTAPGIHWYSRLLYRIGSWVLDSDSLHPLGM
MVSSS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctcttggtgggcttcatctgcgctctttta
gtctcctctgggctgacttgtggaccaggcaggggcattggaaaaaggagacaccccaaa
aagctgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatcacaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacacgggagctgacagactg
atgactcagcgctgcaaggacaagctgaacgctctggcgatctcggtgatgaaccagtgg
cccggggtaaagttgcgggtgaccgagggctgggacgaggacggccaccactccgaggag
tccctgcactacgagggccgcgccgtggacatcaccacgtcggaccgggaccgcagcaag
tacggcatgctggcccgcctggccgtcgaggctggcttcgactgggtctactacgagtcc
aaggcgcacatccactgctccgtcaaagcagaaaactcagtggcggccaaatccggtggt
tgcttccccggctcggccacggtgcacctggagaaaggtgggaccaagctggtgaaggac
ctgaggcctggagaccgggtgctggtggccgacaccgaaggccgtctgctctacagcgac
ttcctcaccttcctggaccgcgaggacggctcccacaagctcttctacgtcatcgagacg
cggcagccccgggcccagctgctgctgacggccgcccacctcctgttcgtggccccccag
cagaaccagtcggaggcagggagcaccggcggccgggcgctgttcgccagccgcgtgcgg
ccgggccagcgcgtcttcgtgctgggcgagggcgggcggcggctgctgccggcggccgtg
caccgcgtgtcgctgcgggaggaggcgtcgggagcctacgcgccactcaccgcccagggc
accatcctcatcgaccgcgtgctggcctcgtgctacgccgtcatcgaggagcacagctgg
gcgcactgggccttcgctcccttccgcctgctgcaggccctgctggccgccctctgtccc
gccgggatggggtgccccatgggagaccccacggcccccggcatccactggtactctcgg
ctcctctaccgcatcggcagctgggtgctggatagtgactctctgcacccgctgggcatg
atggtgtcgtccagctga
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