Zonotrichia leucophrys gambelii (white-crowned sparrow): 135443689
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Entry
135443689 CDS
T09958
Symbol
VIM
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
zle
Zonotrichia leucophrys gambelii (white-crowned sparrow)
Pathway
zle04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
zle00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135443689 (VIM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zle03019
]
135443689 (VIM)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
zle04812
]
135443689 (VIM)
04147 Exosome [BR:
zle04147
]
135443689 (VIM)
Messenger RNA biogenesis [BR:
zle03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
135443689 (VIM)
Cytoskeleton proteins [BR:
zle04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
135443689 (VIM)
Exosome [BR:
zle04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
135443689 (VIM)
Exosomal proteins of other cancer cells
135443689 (VIM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
TolA_bind_tri
DUF7491
TPR_MLP1_2
RBD-FIP
Sec10_N
DUF4515
Motif
Other DBs
NCBI-GeneID:
135443689
NCBI-ProteinID:
XP_064560267
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All DBs
Position
2:complement(21424987..21433251)
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AA seq
459 aa
AA seq
DB search
MSISTKNSSYRRMFGGGSRPSTGTRYITSSSRYSLGSALRPSSARYVSASPGGMYATKTT
SVRLRSSMPPMRLHDSVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQ
NKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLRE
KLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQA
QLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNND
ALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQD
EIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETN
IESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcagcacgaaaaactcctcgtaccggcgcatgttcggcgggggcagccgcccc
agcaccggcacccgctacatcacgtccagcagccggtactcgctgggcagcgccctgcgg
cccagcagcgcccggtacgtgtccgcctcgcccggcggcatgtacgccactaagacgacg
tcggtgcggctgcggagcagcatgccgcccatgcggctccacgactccgtggacttctcc
ctggccgacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggttgagctg
caggagcttaatgaccgcttcgccaactacatcgacaaggtgcgctttctggagcagcag
aacaagatcttgctggccgagctagagcagctcaagggcaagggcacgtcccgcctgggc
gacctctacgaggaggagatgcgggagctgcggcgacaggtggaccagctcaccaacgac
aaggcacgagtggaagtggagcgggacaacctcgccgacgacatcatgcggctgcgggag
aagctgcaagaggagatgcttcagagggaggaggccgagaacaccctgcagtccttcaga
caggatgttgacaacgcctctctggcacgtcttgatcttgagcgcaaagttgagtccctg
caagaggagattgtcttcttgaagaaacttcatgatgaggaaatccgagaactgcaggcc
caactccaggaacagcacatccaaattgatatggatgtttctaagcctgaccttactgct
gccctgcgggatgttcgccaacagtatgaaagtgttgctgctaagaatcttcaggaagct
gaagagtggtacaagtccaaatttgcagatctctctgaagctgctaacaggaacaacgat
gccctgcgccaggccaagcaggaagccaatgagtaccgcagacagatccagtctctcacc
tgcgaggtcgatgctcttaagggaagcaatgagtccctggagcgccaaatgcgtgagatg
gaggagaattttgctgtggaagctgctaactaccaagacactattgggcgcctgcaggat
gagattcagaacatgaaggaagaaatggctcgccatctccgcgagtaccaggacctgctg
aatgtaaagatggctcttgatattgaaattgccacctacagaaaactgctggagggtgaa
gagagcaggattaacatgcctattccaacctttgcttctttgaacctgagagaaaccaac
attgagtctcagccaatggttgacactcactcaaagagaacacttctaattaagaccgtc
gaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaa
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